LICENSE
README.md
pyproject.toml
src/java_codebase_rag/__init__.py
src/java_codebase_rag/_fdlimit.py
src/java_codebase_rag/_stdio.py
src/java_codebase_rag/_version.py
src/java_codebase_rag/cli.py
src/java_codebase_rag/cli_format.py
src/java_codebase_rag/cli_progress.py
src/java_codebase_rag/config.py
src/java_codebase_rag/installer.py
src/java_codebase_rag/jrag.py
src/java_codebase_rag/jrag_envelope.py
src/java_codebase_rag/jrag_hints.py
src/java_codebase_rag/jrag_render.py
src/java_codebase_rag/lance_optimize.py
src/java_codebase_rag/pipeline.py
src/java_codebase_rag/progress.py
src/java_codebase_rag/read_payloads.py
src/java_codebase_rag.egg-info/PKG-INFO
src/java_codebase_rag.egg-info/SOURCES.txt
src/java_codebase_rag.egg-info/dependency_links.txt
src/java_codebase_rag.egg-info/entry_points.txt
src/java_codebase_rag.egg-info/requires.txt
src/java_codebase_rag.egg-info/top_level.txt
src/java_codebase_rag/absence/__init__.py
src/java_codebase_rag/absence/absence_diagnosis.py
src/java_codebase_rag/absence/absence_types.py
src/java_codebase_rag/absence/absence_vocab.py
src/java_codebase_rag/analysis/__init__.py
src/java_codebase_rag/analysis/pr_analysis.py
src/java_codebase_rag/analysis/resolve_service.py
src/java_codebase_rag/ast/__init__.py
src/java_codebase_rag/ast/ast_java.py
src/java_codebase_rag/ast/brownfield_events.py
src/java_codebase_rag/ast/chunk_heuristics.py
src/java_codebase_rag/graph/__init__.py
src/java_codebase_rag/graph/build_ast_graph.py
src/java_codebase_rag/graph/graph_enrich.py
src/java_codebase_rag/graph/graph_types.py
src/java_codebase_rag/graph/java_ontology.py
src/java_codebase_rag/graph/ladybug_queries.py
src/java_codebase_rag/graph/path_filtering.py
src/java_codebase_rag/index/__init__.py
src/java_codebase_rag/index/java_index_flow_lancedb.py
src/java_codebase_rag/index/java_index_v1_common.py
src/java_codebase_rag/install_data/__init__.py
src/java_codebase_rag/install_data/agents/explorer-rag-cli.md
src/java_codebase_rag/install_data/agents/explorer-rag-enhanced.md
src/java_codebase_rag/install_data/skills/explore-codebase/SKILL.md
src/java_codebase_rag/install_data/skills/explore-codebase-cli/SKILL.md
src/java_codebase_rag/mcp/__init__.py
src/java_codebase_rag/mcp/mcp_hints.py
src/java_codebase_rag/mcp/mcp_v2.py
src/java_codebase_rag/mcp/server.py
src/java_codebase_rag/search/__init__.py
src/java_codebase_rag/search/index_common.py
src/java_codebase_rag/search/search_lancedb.py
src/java_codebase_rag/search/search_lexical.py
src/java_codebase_rag/search/search_scoring.py
src/java_codebase_rag/watch/__init__.py
src/java_codebase_rag/watch/client.py
src/java_codebase_rag/watch/daemon.py
src/java_codebase_rag/watch/lock.py
src/java_codebase_rag/watch/paths.py
src/java_codebase_rag/watch/protocol.py
src/java_codebase_rag/watch/server.py
src/java_codebase_rag/watch/warm.py
src/java_codebase_rag/watch/watcher.py
tests/test_config_watch.py
tests/test_docs_watch.py