LICENSE
README.md
pyproject.toml
setup.py
defense_finder/__init__.py
defense_finder/config.json
defense_finder/ESM_DF/model.py
defense_finder/ESM_DF/tokenizer/ESM2_tokenizer/special_tokens_map.json
defense_finder/ESM_DF/tokenizer/ESM2_tokenizer/tokenizer_config.json
defense_finder/ESM_DF/tokenizer/ESM2_tokenizer/vocab.txt
defense_finder/GeneCLR_DF/__init__.py
defense_finder/GeneCLR_DF/finetuning_config_minimal.yaml
defense_finder/GeneCLR_DF/geneclr_helper.py
defense_finder/GeneCLR_DF/geneclr/datamodule_inference.py
defense_finder/GeneCLR_DF/geneclr/model.py
defense_finder/GeneCLR_DF/geneclr/prodigal_io.py
defense_finder/GeneCLR_DF/geneclr/components/__init__.py
defense_finder/GeneCLR_DF/geneclr/components/context_track.py
defense_finder/GeneCLR_DF/geneclr/components/focal_track.py
defense_finder/GeneCLR_DF/geneclr/components/modeling_fastem.py
defense_finder_cli/__init__.py
defense_finder_cli/_version.py
defense_finder_cli/main.py
defense_finder_posttreat/__init__.py
defense_finder_posttreat/best_solution.py
defense_finder_posttreat/df_genes.py
defense_finder_posttreat/df_hmmer.py
defense_finder_posttreat/df_systems.py
defense_finder_updater/__init__.py
mdmparis_defense_finder.egg-info/PKG-INFO
mdmparis_defense_finder.egg-info/SOURCES.txt
mdmparis_defense_finder.egg-info/dependency_links.txt
mdmparis_defense_finder.egg-info/entry_points.txt
mdmparis_defense_finder.egg-info/requires.txt
mdmparis_defense_finder.egg-info/top_level.txt
tests/test_functional_test.py