CAMSA report

Assemblies overview

ID Name # APs Orientations (O / SO / U) NC OC / OSC IC / ISC MAP
A1 scaffmatch 188 188 / 0 / 0 178 10 / 0 0 / 0 185 (98.40 %)
A2 sga 124 124 / 0 / 0 120 4 / 0 0 / 0 121 (97.58 %)
A3 soap2 187 187 / 0 / 0 177 10 / 0 0 / 0 186 (99.47 %)
A4 sspace 187 187 / 0 / 0 179 8 / 0 0 / 0 185 (98.93 %)
ID Name # APs Orientations (O / SO / U) NC OC / OSC IC / ISC MAP

Individual assemblies


Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
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Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
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Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP

Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
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Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP
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47 8 + + O 0 0 0 0 0 1
203 78 - - O 0 0 0 0 0 1
162 175 - - O 0 0 0 0 0 1
14 152 + + O 0 0 0 0 0 1
136 68 - - O 0 0 0 0 0 1
191 86 + + O 0 0 0 0 0 1
182 30 + + O 0 0 0 0 0 1
141 93 + + O 0 0 0 0 0 1
37 80 + + O 0 0 0 0 0 1
88 93 - - O 0 0 0 0 0 1
182 39 - - O 0 0 0 0 0 1
12 49 + + O 0 0 0 0 0 1
156 196 - - O 0 0 0 0 0 1
202 207 - - O 0 0 0 0 0 1
117 74 + + O 0 0 0 0 0 1
178 204 + + O 0 0 0 0 0 1
196 87 - - O 0 0 0 0 0 1
162 168 + - O 0 0 0 0 0 1
13 38 + + O 0 0 0 0 0 1
159 170 + + O 0 0 0 0 0 1
111 40 + + O 0 0 0 0 0 1
187 42 - - O 0 0 0 0 0 1
109 148 - - O 0 0 0 0 0 1
105 17 - - O 0 0 0 0 0 1
62 70 + + O 0 0 0 0 0 1
104 44 - - O 0 0 0 0 0 1
195 24 - - O 0 0 0 0 0 1
67 69 + + O 0 0 0 0 0 1
121 184 - - O 0 0 0 0 0 1
152 155 + + O 0 0 0 0 0 1
111 58 - - O 0 0 0 0 0 1
107 201 - - O 0 0 0 0 0 1
134 37 + + O 0 0 0 0 0 1
188 201 + + O 0 0 0 0 0 1
186 85 - - O 0 0 0 0 0 1
28 55 - - O 0 0 0 0 0 1
119 97 - - O 0 0 0 0 0 1
128 53 + + O 0 0 0 0 0 1
161 5 + - O 0 0 0 0 1 1
154 99 - - O 0 0 0 0 0 1
128 72 - - O 0 0 0 0 0 1
106 76 - - O 0 0 0 0 0 1
114 45 - - O 0 0 0 0 0 1
167 168 + + O 0 0 0 0 0 1
202 24 + + O 0 0 0 0 0 1
153 70 - - O 0 0 0 0 0 1
203 60 + + O 0 0 0 0 0 1
57 59 - - O 0 0 0 0 0 1
32 84 + + O 0 0 0 0 0 1
143 6 - - O 0 0 0 1 0 1
120 2 - - O 0 0 0 0 0 1
101 91 - - O 0 0 0 0 0 1
129 35 - - O 0 0 0 0 0 1
34 57 - - O 0 0 0 0 0 1
124 126 + + O 0 0 0 0 0 1
138 154 - - O 0 0 0 0 0 1
114 115 + + O 0 0 0 0 0 1
17 53 - - O 0 0 0 0 0 1
20 207 + + O 0 0 0 0 0 1
140 75 - - O 0 0 0 0 0 1
0 205 - - O 0 0 0 1 1 1
197 25 + + O 0 0 0 0 0 1
186 79 + + O 0 0 0 0 0 1
173 174 + + O 0 0 0 0 0 1
113 19 + + O 0 0 0 1 0 1
137 183 - - O 0 0 0 0 0 1
131 43 - - O 0 0 0 0 0 1
199 35 + + O 0 0 0 0 0 1
180 19 - - O 0 0 0 0 0 1
41 8 - - O 0 0 0 0 0 1
110 61 - - O 0 0 0 0 0 1
113 193 - - O 0 0 0 0 0 1
18 49 - - O 0 0 0 1 1 0
131 205 + + O 0 0 0 0 0 1
145 28 - - O 0 0 0 0 0 1
133 27 - - O 0 0 0 0 0 1
139 178 + + O 0 0 0 0 0 1
164 175 + + O 0 0 0 0 0 1
171 192 + + O 0 0 0 0 0 1
103 87 + + O 0 0 0 0 0 1
20 84 - - O 0 0 0 0 0 1
116 74 - - O 0 0 0 0 0 1
Seq1 Seq2 Or1 Or2 Or ISC IC OSC OC Unique MAP

Aggregated assembly points

[ scaffmatch (A1); sga (A2); soap2 (A3); sspace (A4) ]


Sequence lengths

Sources Seq1 Seq2 OOr1 OOr2 POr1 POr2 Or1 Or2 CW Or ISC IC ISC OC MAP self_id detailed
[A1, A2, A3, A4] 190 59 + + + + + + 4.0 O 0 0 0 0 1 m_0 0
[A1, A2, A3, A4] 157 33 - - - - - - 4.0 O 0 0 0 0 1 m_1 0
[A1, A2, A3, A4] 9 97 + + + + + + 4.0 O 0 0 0 0 1 m_2 0
[A1, A2, A3, A4] 102 42 + + + + + + 4.0 O 0 0 0 0 1 m_3 0
[A1, A2, A3, A4] 133 183 + + + + + + 4.0 O 0 0 0 0 1 m_4 0
[A1, A2, A3, A4] 15 2 + + + + + + 4.0 O 0 0 0 0 1 m_5 0
[A1, A2, A3, A4] 130 190 + + + + + + 4.0 O 0 0 0 0 1 m_6 0
[A1, A3, A4] 151 85 + + + + + + 3.0 O 0 0 0 0 1 m_7 0
[A1, A3, A4] 68 7 - - - - - - 3.0 O 0 0 0 0 1 m_8 0
[A1, A2, A3, A4] 45 95 - - - - - - 4.0 O 0 0 0 0 1 m_9 0
[A1, A2, A3, A4] 108 150 + + + + + + 4.0 O 0 0 0 0 1 m_10 0
[A1, A2, A3, A4] 12 31 - - - - - - 4.0 O 0 0 0 0 1 m_11 0
[A1, A2, A3] 10 71 + + + + + + 3.0 O 0 0 0 0 1 m_12 0
[A1, A2, A3, A4] 46 65 - - - - - - 4.0 O 0 0 0 0 1 m_13 0
[A1, A2, A3, A4] 118 71 - - - - - - 4.0 O 0 0 0 0 1 m_14 0
[A1, A3, A4] 6 90 - - - - - - 3.0 O 0 0 0 [A2] 1 m_15 0
[A4] 161 176 - - - - - - 1.0 O 0 0 0 0 1 m_16 0
[A1, A2, A3, A4] 116 9 + + + + + + 4.0 O 0 0 0 0 1 m_17 0
[A1, A3, A4] 29 64 + + + + + + 3.0 O 0 0 0 0 1 m_18 0
[A1, A3] 127 164 + + + + + + 2.0 O 0 0 0 0 1 m_19 0
[A1, A2, A3, A4] 115 177 + + + + + + 4.0 O 0 0 0 0 1 m_20 0
[A1, A2, A3, A4] 119 54 + + + + + + 4.0 O 0 0 0 0 1 m_21 0
[A1, A3, A4] 22 98 + + + + + + 3.0 O 0 0 0 0 1 m_22 0
[A1, A3, A4] 189 60 - - - - - - 3.0 O 0 0 0 0 1 m_23 0
[A1, A2, A3, A4] 163 185 + + + + + + 4.0 O 0 0 0 0 1 m_24 0
[A1, A2, A3, A4] 82 94 - - - - - - 4.0 O 0 0 0 0 1 m_25 0
[A1, A3, A4] 169 172 - - - - - - 3.0 O 0 0 0 0 1 m_26 0
[A1, A2, A3, A4] 170 181 + + + + + + 4.0 O 0 0 0 0 1 m_27 0
[A1, A2, A3, A4] 179 54 - - - - - - 4.0 O 0 0 0 0 1 m_28 0
[A1, A2, A3, A4] 14 145 - - - - - - 4.0 O 0 0 0 0 1 m_29 0
[A1, A2, A3, A4] 52 94 + + + + + + 4.0 O 0 0 0 0 1 m_30 0
[A1, A2, A3, A4] 110 63 + + + + + + 4.0 O 0 0 0 0 1 m_31 0
[A1, A2, A3, A4] 129 96 + + + + + + 4.0 O 0 0 0 0 1 m_32 0
[A1, A3, A4] 146 4 - - - - - - 3.0 O 0 0 0 [A2] 1 m_33 0
[A1, A3, A4] 127 181 - - - - - - 3.0 O 0 0 0 0 1 m_34 0
[A1, A2, A3, A4] 26 32 + + + + + + 4.0 O 0 0 0 0 1 m_35 0
[A2, A3, A4] 159 163 - + - + - + 3.0 O 0 0 0 0 1 m_36 0
[A1, A3, A4] 194 26 + + + + + + 3.0 O 0 0 0 0 1 m_37 0
[A1, A2, A3, A4] 102 153 - - - - - - 4.0 O 0 0 0 0 1 m_38 0
[A1, A2, A3, A4] 65 77 - - - - - - 4.0 O 0 0 0 0 1 m_39 0
[A1, A3, A4] 134 66 - - - - - - 3.0 O 0 0 0 0 1 m_40 0
[A1, A2, A3, A4] 132 143 - - - - - - 4.0 O 0 0 0 0 1 m_41 0
[A1, A2, A3, A4] 108 135 - - - - - - 4.0 O 0 0 0 0 1 m_42 0
[A1, A2, A3, A4] 13 157 - - - - - - 4.0 O 0 0 0 0 1 m_43 0
[A1, A3, A4] 193 40 - - - - - - 3.0 O 0 0 0 0 1 m_44 0
[A1, A2, A3, A4] 124 146 - - - - - - 4.0 O 0 0 0 0 1 m_45 0
[A1, A2, A3, A4] 120 76 + + + + + + 4.0 O 0 0 0 0 1 m_46 0
[A1, A3, A4] 194 98 - - - - - - 3.0 O 0 0 0 0 1 m_47 0
[A1, A2, A3, A4] 198 23 + + + + + + 4.0 O 0 0 0 0 1 m_48 0
[A1, A3, A4] 144 189 - - - - - - 3.0 O 0 0 0 0 1 m_49 0
[A1, A2, A3, A4] 130 144 - - - - - - 4.0 O 0 0 0 0 1 m_50 0
[A1, A2, A3, A4] 103 73 - - - - - - 4.0 O 0 0 0 0 1 m_51 0
[A1, A2, A3, A4] 100 118 - - - - - - 4.0 O 0 0 0 0 1 m_52 0
[A1, A3, A4] 195 61 + + + + + + 3.0 O 0 0 0 0 1 m_53 0
[A1, A3, A4] 149 7 + + + + + + 3.0 O 0 0 0 0 1 m_54 0
[A1] 158 166 + - + - + - 1.0 O 0 0 0 0 1 m_55 0
[A1, A2, A3, A4] 165 81 + + + + + + 4.0 O 0 0 0 0 1 m_56 0
[A1, A2, A3, A4] 138 78 + + + + + + 4.0 O 0 0 0 0 1 m_57 0
[A1, A2, A3, A4] 121 151 + + + + + + 4.0 O 0 0 0 0 1 m_58 0
[A1, A2, A3, A4] 136 72 + + + + + + 4.0 O 0 0 0 0 1 m_59 0
[A1, A2, A3, A4] 64 89 + + + + + + 4.0 O 0 0 0 0 1 m_60 0
[A1, A3, A4] 106 148 + + + + + + 3.0 O 0 0 0 0 1 m_61 0
[A1, A2, A3, A4] 197 63 - - - - - - 4.0 O 0 0 0 0 1 m_62 0
[A1, A2, A3, A4] 58 96 - - - - - - 4.0 O 0 0 0 0 1 m_63 0
[A1, A2, A3, A4] 198 69 - - - - - - 4.0 O 0 0 0 0 1 m_64 0
[A1, A4] 21 43 + + + + + + 2.0 O 0 0 0 0 1 m_65 0
[A1, A2, A3, A4] 11 180 - - - - - - 4.0 O 0 0 0 0 1 m_66 0
[A1, A2, A3, A4] 165 86 - - - - - - 4.0 O 0 0 0 0 1 m_67 0
[A1, A2, A3, A4] 30 62 + + + + + + 4.0 O 0 0 0 0 1 m_68 0
[A1, A3, A4] 192 55 + + + + + + 3.0 O 0 0 0 0 1 m_69 0
[A1, A3, A4] 38 73 + + + + + + 3.0 O 0 0 0 0 1 m_70 0
[A1, A2, A3, A4] 46 90 + + + + + + 4.0 O 0 0 0 0 1 m_71 0
[A1, A3, A4] 11 29 + + + + + + 3.0 O 0 0 0 0 1 m_72 0
[A1, A2, A3, A4] 132 75 + + + + + + 4.0 O 0 0 0 0 1 m_73 0
[A1, A3, A4] 22 88 - - - - - - 3.0 O 0 0 0 0 1 m_74 0
[A1, A2, A3, A4] 179 95 + + + + + + 4.0 O 0 0 0 0 1 m_75 0
[A1, A3, A4] 4 82 - - - - - - 3.0 O 0 0 0 [A2] 1 m_76 0
[A1, A2, A3, A4] 41 56 + + + + + + 4.0 O 0 0 0 0 1 m_77 0
[A1, A3, A4] 169 185 + - + - + - 3.0 O 0 0 0 0 1 m_78 0
[A1, A2, A3, A4] 104 36 + + + + + + 4.0 O 0 0 0 0 1 m_79 0
[A1, A3, A4] 18 33 + + + + + + 3.0 O 0 0 0 0 1 m_80 0
[A1, A4] 167 172 - + None None - + 2.0 O 0 0 0 0 0 m_81 0
[A1, A2, A3, A4] 81 91 + + + + + + 4.0 O 0 0 0 0 1 m_82 0
[A1, A3, A4] 139 25 - - - - - - 3.0 O 0 0 0 0 1 m_83 0
[A1, A2, A3, A4] 101 27 + + + + + + 4.0 O 0 0 0 0 1 m_84 0
[A1, A2, A3, A4] 51 77 + + + + + + 4.0 O 0 0 0 0 1 m_85 0
[A4] 0 16 + + + + + + 1.0 O 0 0 0 [A3] 1 m_86 0
[A1, A2, A3, A4] 147 79 - - - - - - 4.0 O 0 0 0 0 1 m_87 0
[A1, A3, A4] 149 155 - - - - - - 3.0 O 0 0 0 0 1 m_88 0
[A1, A2, A3, A4] 36 51 + + + + + + 4.0 O 0 0 0 0 1 m_89 0
[A1, A2, A3, A4] 109 44 + + + + + + 4.0 O 0 0 0 0 1 m_90 0
[A2] 143 90 - - None None - - 1.0 O 0 0 0 [A1, A3, A4] 0 m_91 0
[A1, A2, A3, A4] 137 83 + + + + + + 4.0 O 0 0 0 0 1 m_92 0
[A1, A3, A4] 140 31 + + + + + + 3.0 O 0 0 0 0 1 m_93 0
[A1, A3, A4] 107 47 + + + + + + 3.0 O 0 0 0 0 1 m_94 0
[A1, A2, A3, A4] 141 23 - - - - - - 4.0 O 0 0 0 0 1 m_95 0
[A1, A2, A3, A4] 177 52 + + + + + + 4.0 O 0 0 0 0 1 m_96 0
[A1, A2, A3, A4] 156 171 + + + + + + 4.0 O 0 0 0 0 1 m_97 0
[A1, A3] 10 3 - - - - - - 2.0 O 0 0 0 [A2] 1 m_98 0
[A1, A3, A4] 126 188 + + + + + + 3.0 O 0 0 0 0 1 m_99 0
[A3, A4] 16 176 + + + + + + 2.0 O 0 0 0 0 1 m_100 0
[A3] 16 205 - - None None - - 1.0 O 0 0 0 [A4] 0 m_101 0
[A1, A2, A3, A4] 199 56 - - - - - - 4.0 O 0 0 0 0 1 m_102 0
[A1, A2, A3, A4] 39 89 - - - - - - 4.0 O 0 0 0 0 1 m_103 0
[A1, A2, A3, A4] 80 99 + + + + + + 4.0 O 0 0 0 0 1 m_104 0
[A1, A2, A3, A4] 15 92 - - - - - - 4.0 O 0 0 0 0 1 m_105 0
[A1, A2, A3, A4] 67 83 - - - - - - 4.0 O 0 0 0 0 1 m_106 0
[A1, A2, A3, A4] 117 34 - - - - - - 4.0 O 0 0 0 0 1 m_107 0
[A1] 158 160 - + - + - + 1.0 O 0 0 0 0 1 m_108 0
[A1, A2, A3, A4] 147 92 + + + + + + 4.0 O 0 0 0 0 1 m_109 0
[A1, A3, A4] 100 66 + + + + + + 3.0 O 0 0 0 0 1 m_110 0
[A1, A2, A3, A4] 105 142 + + + + + + 4.0 O 0 0 0 0 1 m_111 0
[A1, A3, A4] 47 8 + + + + + + 3.0 O 0 0 0 0 1 m_112 0
[A1, A2, A3, A4] 203 78 - - - - - - 4.0 O 0 0 0 0 1 m_113 0
[A1, A3, A4] 162 175 - - - - - - 3.0 O 0 0 0 0 1 m_114 0
[A1, A2, A3, A4] 14 152 + + + + + + 4.0 O 0 0 0 0 1 m_115 0
[A1, A2, A3, A4] 136 68 - - - - - - 4.0 O 0 0 0 0 1 m_116 0
[A1, A3, A4] 191 86 + + + + + + 3.0 O 0 0 0 0 1 m_117 0
[A1, A2, A3, A4] 182 30 + + + + + + 4.0 O 0 0 0 0 1 m_118 0
[A1, A2, A3, A4] 141 93 + + + + + + 4.0 O 0 0 0 0 1 m_119 0
[A1, A3, A4] 37 80 + + + + + + 3.0 O 0 0 0 0 1 m_120 0
[A1, A2, A3, A4] 88 93 - - - - - - 4.0 O 0 0 0 0 1 m_121 0
[A1, A2, A3, A4] 182 39 - - - - - - 4.0 O 0 0 0 0 1 m_122 0
[A1, A2, A3, A4] 12 49 + + + + + + 4.0 O 0 0 0 0 1 m_123 0
[A1, A2, A3, A4] 156 196 - - - - - - 4.0 O 0 0 0 0 1 m_124 0
[A1, A2, A3, A4] 202 207 - - - - - - 4.0 O 0 0 0 0 1 m_125 0
[A1, A3, A4] 117 74 + + + + + + 3.0 O 0 0 0 0 1 m_126 0
[A1, A2, A3, A4] 178 204 + + + + + + 4.0 O 0 0 0 0 1 m_127 0
[A1, A2, A3, A4] 196 87 - - - - - - 4.0 O 0 0 0 0 1 m_128 0
[A1, A2, A3, A4] 162 168 + - + - + - 4.0 O 0 0 0 0 1 m_129 0
[A1, A3, A4] 13 38 + + + + + + 3.0 O 0 0 0 0 1 m_130 0
[A2] 146 82 - - None None - - 1.0 O 0 0 0 [A1, A3, A4] 0 m_131 0
[A1, A2, A3, A4] 159 170 + + + + + + 4.0 O 0 0 0 0 1 m_132 0
[A1, A2, A3, A4] 111 40 + + + + + + 4.0 O 0 0 0 0 1 m_133 0
[A1, A3, A4] 187 42 - - - - - - 3.0 O 0 0 0 0 1 m_134 0
[A1, A3, A4] 109 148 - - - - - - 3.0 O 0 0 0 0 1 m_135 0
[A1, A2, A3, A4] 105 17 - - - - - - 4.0 O 0 0 0 0 1 m_136 0
[A1, A2, A3, A4] 62 70 + + + + + + 4.0 O 0 0 0 0 1 m_137 0
[A1] 112 113 + - None None + - 1.0 O 0 0 0 [A3, A4] 0 m_138 0
[A1, A2, A3, A4] 104 44 - - - - - - 4.0 O 0 0 0 0 1 m_139 0
[A1, A3, A4] 195 24 - - - - - - 3.0 O 0 0 0 0 1 m_140 0
[A1, A2, A3] 48 49 + - + - + - 3.0 O 0 0 0 [A4] 1 m_141 0
[A1, A2, A3, A4] 67 69 + + + + + + 4.0 O 0 0 0 0 1 m_142 0
[A1, A3, A4] 121 184 - - - - - - 3.0 O 0 0 0 0 1 m_143 0
[A1, A2, A3, A4] 152 155 + + + + + + 4.0 O 0 0 0 0 1 m_144 0
[A1, A2, A3, A4] 111 58 - - - - - - 4.0 O 0 0 0 0 1 m_145 0
[A1, A3, A4] 107 201 - - - - - - 3.0 O 0 0 0 0 1 m_146 0
[A1, A3, A4] 134 37 + + + + + + 3.0 O 0 0 0 0 1 m_147 0
[A2, A3, A4] 188 201 + + + + + + 3.0 O 0 0 0 0 1 m_148 0
[A1, A3, A4] 186 85 - - - - - - 3.0 O 0 0 0 0 1 m_149 0
[A1, A2, A3, A4] 28 55 - - - - - - 4.0 O 0 0 0 0 1 m_150 0
[A1, A2, A3, A4] 119 97 - - - - - - 4.0 O 0 0 0 0 1 m_151 0
[A1, A3, A4] 128 53 + + + + + + 3.0 O 0 0 0 0 1 m_152 0
[A2] 10 142 - - None None - - 1.0 O 0 0 0 [A1, A3] 0 m_153 0
[A4] 161 5 + - + - + - 1.0 O 0 0 0 0 1 m_154 0
[A1, A2, A3, A4] 154 99 - - - - - - 4.0 O 0 0 0 0 1 m_155 0
[A1, A3, A4] 128 72 - - - - - - 3.0 O 0 0 0 0 1 m_156 0
[A1, A2, A3, A4] 106 76 - - - - - - 4.0 O 0 0 0 0 1 m_157 0
[A1, A2, A3, A4] 114 45 - - - - - - 4.0 O 0 0 0 0 1 m_158 0
[A1, A3, A4] 167 168 + + + + + + 3.0 O 0 0 0 0 1 m_159 0
[A1, A3, A4] 202 24 + + + + + + 3.0 O 0 0 0 0 1 m_160 0
[A1, A2, A3, A4] 153 70 - - - - - - 4.0 O 0 0 0 0 1 m_161 0
[A1, A2, A3, A4] 203 60 + + + + + + 4.0 O 0 0 0 0 1 m_162 0
[A1, A3] 18 48 - + - + - + 2.0 O 0 0 0 [A4] 1 m_163 0
[A1, A2, A3, A4] 57 59 - - - - - - 4.0 O 0 0 0 0 1 m_164 0
[A1, A2, A3, A4] 32 84 + + + + + + 4.0 O 0 0 0 0 1 m_165 0
[A1, A3] 142 3 + + + + + + 2.0 O 0 0 0 [A2] 1 m_166 0
[A1] 112 19 - + None None - + 1.0 O 0 0 0 [A3, A4] 0 m_167 0
[A1, A3, A4] 143 6 - - - - - - 3.0 O 0 0 0 [A2] 1 m_168 0
[A1, A2, A3, A4] 120 2 - - - - - - 4.0 O 0 0 0 0 1 m_169 0
[A1, A2, A3, A4] 101 91 - - - - - - 4.0 O 0 0 0 0 1 m_170 0
[A1, A2, A3, A4] 129 35 - - - - - - 4.0 O 0 0 0 0 1 m_171 0
[A1, A2, A3, A4] 34 57 - - - - - - 4.0 O 0 0 0 0 1 m_172 0
[A1, A2, A3, A4] 124 126 + + + + + + 4.0 O 0 0 0 0 1 m_173 0
[A1, A2, A3, A4] 138 154 - - - - - - 4.0 O 0 0 0 0 1 m_174 0
[A1, A2, A3, A4] 114 115 + + + + + + 4.0 O 0 0 0 0 1 m_175 0
[A1, A2, A3, A4] 17 53 - - - - - - 4.0 O 0 0 0 0 1 m_176 0
[A1, A2, A3, A4] 20 207 + + + + + + 4.0 O 0 0 0 0 1 m_177 0
[A1, A3, A4] 140 75 - - - - - - 3.0 O 0 0 0 0 1 m_178 0
[A4] 0 205 - - - - - - 1.0 O 0 0 0 [A3] 1 m_179 0
[A1, A2, A3, A4] 197 25 + + + + + + 4.0 O 0 0 0 0 1 m_180 0
[A1, A2, A3, A4] 186 79 + + + + + + 4.0 O 0 0 0 0 1 m_181 0
[A3, A4] 173 174 + + + + + + 2.0 O 0 0 0 0 1 m_182 0
[A3, A4] 113 19 + + + + + + 2.0 O 0 0 0 [A1] 1 m_183 0
[A1, A2, A3, A4] 137 183 - - - - - - 4.0 O 0 0 0 0 1 m_184 0
[A1, A3, A4] 131 43 - - - - - - 3.0 O 0 0 0 0 1 m_185 0
[A1, A2, A3, A4] 199 35 + + + + + + 4.0 O 0 0 0 0 1 m_186 0
[A1, A3, A4] 180 19 - - - - - - 3.0 O 0 0 0 0 1 m_187 0
[A1, A3, A4] 41 8 - - - - - - 3.0 O 0 0 0 0 1 m_188 0
[A1, A2, A3, A4] 110 61 - - - - - - 4.0 O 0 0 0 0 1 m_189 0
[A1, A3, A4] 113 193 - - - - - - 3.0 O 0 0 0 0 1 m_190 0
[A4] 18 49 - - None None - - 1.0 O 0 0 0 [A1, A2, A3] 0 m_191 0
[A1, A3, A4] 131 205 + + + + + + 3.0 O 0 0 0 0 1 m_192 0
[A1, A2, A3, A4] 145 28 - - - - - - 4.0 O 0 0 0 0 1 m_193 0
[A1, A2, A3, A4] 133 27 - - - - - - 4.0 O 0 0 0 0 1 m_194 0
[A1, A3, A4] 139 178 + + + + + + 3.0 O 0 0 0 0 1 m_195 0
[A1] 200 21 + + + + + + 1.0 O 0 0 0 0 1 m_196 0
[A1, A3, A4] 164 175 + + + + + + 3.0 O 0 0 0 0 1 m_197 0
[A1, A3, A4] 171 192 + + + + + + 3.0 O 0 0 0 0 1 m_198 0
[A1, A2, A3, A4] 103 87 + + + + + + 4.0 O 0 0 0 0 1 m_199 0
[A1, A2, A3, A4] 20 84 - - - - - - 4.0 O 0 0 0 0 1 m_200 0
[A1, A3, A4] 116 74 - - - - - - 3.0 O 0 0 0 0 1 m_201 0
Sources Seq1 Seq2 OOr1 OOr2 POr1 POr2 Or1 Or2 CW Or ISC IC ISC OC MAP self_id detailed

How to interpret column values

  • Sources: column represents the list of assemblies, that reported a particular assembly point. Assemblies are referred to by there ids, which in turn can be found in Assemblies summary table, as well as next to each assembly in the Individual assemblies section
  • Seq1: column corresponds to first, out of two fragments, that participate in the reported assembly point.
  • Seq2: column corresponds to second, out of two fragments, that participate in the reported assembly point
  • Or1: column corresponds to relative orientation of Seq1 wrt Seq2 in the reported assembly.
    1. + orientation corresponds to the head of Seq1 being adjacent in the reported assembly
    2. - orientation corresponds to the tail of Seq1 being adjacent in the reported assembly
  • Or2: column corresponds to relative orientation of Seq2 wrt Seq1 in the reported assembly.
    1. + orientation corresponds to the tail of Seq2 being adjacent in the reported assembly
    2. - orientation corresponds to the head of Seq2 being adjacent in the reported assembly
  • CW: confidence weight (score) for the reported assembly point. Equals to the sum of assembly points's scores, reported by each source
  • Or: a flag determining the class of the assembly point:
    1. O: oriented assembly point, that is for both fragments their extremities are specified
    2. SO: semi-oriented assembly point, that is only for one out of two fragments an assembly extremity is specified
    3. U: unoriented assembly point, that is for both fragments their extremities used for assembly are not specified
  • ISC: corresponds to the list of sources, with which this assembly point is In-SemiConflicted. This is the case, when the assembly point (by some, but not all of its realizations) is conflicted with some other assembly point (with some, but not all of later one's realizations), and they both come from same source.
    0 is specified if no in-semiconflicts were identified for this point.
  • IC: corresponds to the list of sources, with which this assembly point is In-Conflicted. This is the case, if the assembly point (by all of its realizations), is conflicted with some other assembly point (by all of later one's realizations), and they both come from the same source.
    0 is specified if no in-conflicts were identified for this point.
  • OSC: corresponds to the list of sources, with which this assembly point is Out-SemiConflicted. This is the case, when the assembly point (by some, but not all of its representations) is conflicted with some other assembly point (with some, but not all of later one's realizations), and they come from the different sources. 0 is specified is no out-semiconflicts were identified for this point.
  • OC: corresponds to the list of sources, with which this assembly point is Out-Conflicted. This is the case, when the assembly point (by all of its representations) is conflicted with some other assembly point (with all of later one's realizations), and they come from the different sources. 0 is specified is no out-semiconflicts were identified for this point.
  • MAP: is a flag (i.e. either 0 or 1) corresponding to whether this assembly point participates in the reported Merged-Assembly.

How to filter and order information in the table

  • Built-in filters: every column has a filter in the table heading.
    1. If the filter is represented an input field, then the smart Datatables search is used.
    2. If the input is represented with a dropdown, then all rows with values matching the chosen value will be kept.
    3. There is a table-wide filter on the top right of the table. Again the smart search is used, but in this case it is table-wide, not column specific.
  • Advanced filtering: There is a panel with advance filtering capabilities. Please refer to instructions in it.
Built-in and advanced filters can be combined together. The only difference is that build in filters revert filtering changes on-the-fly, once the filter criteria is removed, while for advanced filtering has to be manually reverted, with the "Remove all filters button".

using layout

Filter the table and draw the first graph


Reading the graph


Coloring

A1
A2
A3
A4

Edges

  • Scaffold edge: is a directed black edge with scaffold name written on it. Represents the scaffold, participating in one or more assembly points. Direction of the edge corresponds to its relative orientation.
    Example:

  • Assembly edge: colored (based on the source assembly) undirected edge corresponding to the reported assembly point.
    • Candidate: all assembly edges from un/semi-oriented assembly points are shown as dashed.
      Example:

    • Exact: all assembly edges from orientedassembly points are shown as solid.
      Example:

    If the edge is shown in bold, it means that the assembly point (its particular realization , corresponding to the egde), participates in the produced merged assembly.
    Example:


    Parallel assembly edges of several colors correspond to assembly points' representations, where the colors determine the list of source assemblies.
    Example:

Modifying the graph

  • Zooming: using the scroll of the mouse, one can zoom in and out of the graph. Note that the position of the pointer determines where the zoom will be focused.
  • Moving: use the standard drag operation to move the graph
  • Fitting: to fit the whole drawn graph in the frame, use the Fit button at the top of the picture

Saving graph image

Using the Save button on the top of the graph image itself, one can save the current view of the graph as a png picture.

Dr. Max A. Alekseyev: maxal@gwu.edu

The project is supported by the National Science Foundation under Grant No. IIS-1462107.

2016 - 2016