Welcome to PacBio Data Processing’s documentation!¶

Contents:

  • PacBio data processing
    • Features
    • Credits
  • Quickstart for the impatient
    • Installation
    • Using Pacbio Data Processing
  • Quickstart on a cluster
  • Usage
    • Installation
    • Filtering Bam files with bam-filter
    • Single molecule analysis
    • Using the package as a library
  • Guides
    • What is the PacBio sequencing technology?
    • Single Molecule Analysis
    • Description of data in the Methylation Reports
    • BAM format
    • Phred transformed scores
    • Using PacBio Data Processing on a cluster
    • PacBio tools
    • CCS
    • Blasr
    • Pbindex
    • HTSlib
    • The PacBio chemistries
  • Developer’s documentation
    • Development notes
    • Miscellaneous notes
    • HOW to release a version
    • Requirements
    • Roadmap
    • Coding conventions
    • Design notes
    • Modules
    • How to contribute
    • Credits
    • Changelog
  • pacbio_data_processing
    • pacbio_data_processing package

Indices and tables¶

  • Index

  • Module Index

  • Search Page

PacBio Data Processing

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Contents:

  • PacBio data processing
  • Quickstart for the impatient
  • Quickstart on a cluster
  • Usage
  • Guides
  • Developer’s documentation
  • pacbio_data_processing

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  • Documentation overview
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