LICENSE
MANIFEST.in
README.md
setup.py
aps/__init__.py
aps/ai/__init__.py
aps/ai/beamline_controller/__init__.py
aps/ai/beamline_controller/__main__.py
aps/ai/beamline_controller/agent/__init__.py
aps/ai/beamline_controller/agent/agent_listener_factory.py
aps/ai/beamline_controller/agent/facade.py
aps/ai/beamline_controller/agent/machine_learning/__init__.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__init__.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/deep_kernel_gp.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/__init__.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/example_from_internet.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/from_open_ai.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/from_open_ai_fixed.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/gaussian_process_model.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/gpytorch_deep_gaussian_processes.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/gpytorch_exact_DKL.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/ai_jam/__init__.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/ai_jam/dkgp.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/ai_jam/neural_network_surrogate.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/runyu/__init__.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/runyu/ax_developer_classes.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/runyu/bo_modular.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/runyu/extended_surrogate.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/runyu/run_ax_bom.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/__example_code/runyu/run_ax_developer.py
aps/ai/beamline_controller/agent/machine_learning/deep_kernel_model/ax/__init__.py
aps/ai/beamline_controller/agent/machine_learning/neural_networks/__init__.py
aps/ai/beamline_controller/agent/machine_learning/neural_networks/facade.py
aps/ai/beamline_controller/agent/machine_learning/neural_networks/neural_network_manager.py
aps/ai/beamline_controller/agent/machine_learning/neural_networks/neural_network_manager_factory.py
aps/ai/beamline_controller/agent/machine_learning/neural_networks/neural_network_models.py
aps/ai/beamline_controller/agent/machine_learning/neural_networks/tandem_neural_network.py
aps/ai/beamline_controller/agent/machine_learning/neural_networks/adapters/__init__.py
aps/ai/beamline_controller/agent/machine_learning/neural_networks/adapters/hypervolume_manager_adapter.py
aps/ai/beamline_controller/agent/machine_learning/surrogates/__init__.py
aps/ai/beamline_controller/agent/machine_learning/surrogates/ax/__init__.py
aps/ai/beamline_controller/agent/machine_learning/surrogates/ax/ax_custom_surrogate.py
aps/ai/beamline_controller/agent/machine_learning/surrogates/ax/ax_dkl_surrogate.py
aps/ai/beamline_controller/agent/optimization/__init__.py
aps/ai/beamline_controller/agent/optimization/abstract_optimizer.py
aps/ai/beamline_controller/agent/optimization/facade.py
aps/ai/beamline_controller/agent/optimization/hypervolume_manager_factory.py
aps/ai/beamline_controller/agent/optimization/optimizer_factory.py
aps/ai/beamline_controller/agent/optimization/common/__init__.py
aps/ai/beamline_controller/agent/optimization/common/plot_utility.py
aps/ai/beamline_controller/agent/optimization/common/transfer_learning.py
aps/ai/beamline_controller/agent/optimization/common/bayesian/__init__.py
aps/ai/beamline_controller/agent/optimization/common/bayesian/abstract_hypervolume_manager.py
aps/ai/beamline_controller/agent/optimization/common/bayesian/abstract_optimizer.py
aps/ai/beamline_controller/agent/optimization/common/bayesian/facade.py
aps/ai/beamline_controller/agent/optimization/decorators/__init__.py
aps/ai/beamline_controller/agent/optimization/decorators/abstract_hypervolume_manager_decorator.py
aps/ai/beamline_controller/agent/optimization/decorators/direct_beam_image_decorator.py
aps/ai/beamline_controller/agent/optimization/decorators/speckle_analysis_decorator.py
aps/ai/beamline_controller/agent/optimization/decorators/wavefront_analysis_decorator.py
aps/ai/beamline_controller/agent/optimization/moo/__init__.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/__init__.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/abstract_hypervolume_manager.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/abstract_optimizer.py
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aps/ai/beamline_controller/agent/optimization/moo/bayesian/ax/__init__.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/ax/hypervolume_manager.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/ax/optimization_listener.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/ax/optimizer.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/bloptools/__init__.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/bloptools/hypervolume_manager.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/bloptools/optimization_listener.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/bloptools/optimizer.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/bloptools/__test/__init__.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/bloptools/__test/optimizer/__init__.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/bloptools/__test/optimizer/aps_ai_configuration.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/bloptools/__test/optimizer/bloptools_optimization.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/common/__init__.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/common/pareto.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/common/plot_utility.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/optuna/__init__.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/optuna/hypervolume_manager.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/optuna/optimization_listener.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/optuna/optimizer.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/optuna/botorch/__init__.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/optuna/botorch/botorch_acquisition_functions.py
aps/ai/beamline_controller/agent/optimization/moo/bayesian/optuna/botorch/botorch_sampler.py
aps/ai/beamline_controller/agent/optimization/soo/__init__.py
aps/ai/beamline_controller/agent/optimization/soo/bayesian/__init__.py
aps/ai/beamline_controller/agent/optimization/soo/bayesian/abstract_hypervolume_manager.py
aps/ai/beamline_controller/agent/optimization/soo/bayesian/abstract_optimizer.py
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aps/ai/beamline_controller/agent/optimization/soo/bayesian/ax/__init__.py
aps/ai/beamline_controller/agent/optimization/soo/bayesian/ax/hypervolume_manager.py
aps/ai/beamline_controller/agent/optimization/soo/bayesian/ax/optimization_listener.py
aps/ai/beamline_controller/agent/optimization/soo/bayesian/ax/optimizer.py
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aps/ai/beamline_controller/agent/optimization/soo/nonlinear/abstract_hypervolume_manager.py
aps/ai/beamline_controller/agent/optimization/soo/nonlinear/abstract_optimizer.py
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aps/ai/beamline_controller/common/bluesky_utility.py
aps/ai/beamline_controller/common/legacy_keys.py
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aps/ai/beamline_controller/gui/alignment/__init__.py
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aps/ai/beamline_controller/gui/alignment/alignment_manager.py
aps/ai/beamline_controller/gui/alignment/alignment_manager_widget.py
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aps/ai/beamline_controller/gui/configuration/configuration_editor.py
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aps/ai/beamline_controller/initialization/__init__.py
aps/ai/beamline_controller/initialization/beamline_controller_configuration.py
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aps/ai/beamline_controller/initialization/control_systems/__init__.py
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aps/ai/beamline_controller/legacy/agent/__init__.py
aps/ai/beamline_controller/legacy/agent/agent_listener_factory.py
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aps/ai/beamline_controller/legacy/agent/machine_learning/__init__.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__init__.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/deep_kernel_gp.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/__init__.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/example_from_internet.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/from_open_ai.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/from_open_ai_fixed.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/gaussian_process_model.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/gpytorch_deep_gaussian_processes.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/gpytorch_exact_DKL.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/ai_jam/__init__.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/ai_jam/dkgp.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/ai_jam/neural_network_surrogate.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/runyu/__init__.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/runyu/ax_developer_classes.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/runyu/bo_modular.py
aps/ai/beamline_controller/legacy/agent/machine_learning/deep_kernel_model/__example_code/runyu/extended_surrogate.py
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aps/ai/beamline_controller/legacy/agent/optimization/moo/bayesian/__init__.py
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