dna_decode/__init__.py,sha256=6FdZbY8ZPC65piOW1l2q7DOjc2QQjNhPCFIL92oYrkA,209
dna_decode/cli.py,sha256=7iy30hnD48sqVYXcFvj7XVmsI_zwFc9h0L4irCgm5nA,10740
dna_decode/amr/__init__.py,sha256=5wGNvT1BoDM-r6aZQ11C60aRYWpcRgF6v_IXHpXmaKI,64
dna_decode/amr/cli.py,sha256=FIRC6NVinejgtUUJ27daNMONMKhdDG81aSd0XjNHB7I,30144
dna_decode/colocalization/__init__.py,sha256=pgh_wW3yB27VooUFFB74ukJBb211YuUYBx1J5k8Ckag,569
dna_decode/colocalization/__main__.py,sha256=QLgCcVrr7RWs8oc9arznkt375mJ9fb7zquXRSMbgofU,104
dna_decode/colocalization/cli.py,sha256=sNeXzSjmXLLb4Cy7jSzYaj0SwNNm8kpGSI7H9mv5o4M,5627
dna_decode/colocalization/core.py,sha256=_clzpJQ8vBc2Hxw7LxMMxNNjgP0rE4hsLB5JSA5PJ6A,2407
dna_decode/concordance/__init__.py,sha256=aXJguXvaJci2tIkmbrdJiamWbyIgiltXk1Ahg9M5NC0,517
dna_decode/concordance/__main__.py,sha256=R8lc8tVVKCIfKsgc5rlnkeAsBybVFDD-r4wWcNc9Mv0,101
dna_decode/concordance/cli.py,sha256=74E6RlSaPvpqTwzLRNb83vHuNTni5rV6hreLw7z7WFk,5418
dna_decode/concordance/core.py,sha256=kksoIzfJmPga5h-9a7xyprjdO84Ew6ZDZwQzEjn2vEs,3705
dna_decode/data/__init__.py,sha256=jHJAYYh73noNce7Yz3WZo3oyxjOEfRgKoe5iwHwuHxA,394
dna_decode/data/annotations.py,sha256=zwwgPcuKDBjB5aTASI0b-3roYDtR8bheE2v2GsH4vwI,9605
dna_decode/data/antimalarial_amr.py,sha256=hMQdWay6h0dEGL4Jl00zZCn9rrdKDUKHij0E-xL9Fq4,7696
dna_decode/data/antiviral_amr.py,sha256=CeoOe2VTmNiaIjwUHQ6VVF7exs6cpUONOaBPSp_wQRY,7439
dna_decode/data/ast_data.py,sha256=Pr6IOsYmYBcQfXjGsSOd0-ANPpZUTpu_lhps67bFdmA,6678
dna_decode/data/bacdive.py,sha256=leLusnntKRQ9aC53hR7aTN2VAaH23_05aaBM3tiwN3Y,9244
dna_decode/data/bvbrc_genome.py,sha256=vCazuDxSSGKj90o_SbAG0XbY2yL-CW96lq_-sN4b0mc,6646
dna_decode/data/calibrated_amr_rules.json,sha256=7OZ0S9pr5UPUGVWk6Y7LRHQms02qlBdnC5Iz44jJamk,3658
dna_decode/data/cell_key.py,sha256=VXm510wUB8luUteXwFC0SMzpaiMljh_ZtckN6eY_XJk,1009
dna_decode/data/cohort.py,sha256=xvUQcwMc36XL1BUjJ2sONG_SeaTE-KwPAhAWMLYmKOg,19715
dna_decode/data/experimental_drug_rules.py,sha256=7hL38dHjOYdYhqx1PaUHPTUJnN9r38vQTb0ouHTjBEQ,4115
dna_decode/data/external_cohort_genomes.py,sha256=fz4cRjUvjZ9He2pYSb3p70unzy2ZaQl7JlfWhS3Ba0c,4459
dna_decode/data/external_crosswalk.py,sha256=6FkPyUMKNx_KxMSubXBVF8Qo4I3fL5WK1cbZ9cbiLMo,4045
dna_decode/data/external_mic_ingest.py,sha256=zFmb1EczkT3xTLpbd5Xk52HDIWcNf7-wblCtkSwT6xk,2725
dna_decode/data/external_mic_labels.py,sha256=JK_IOPVMHfYIhzkOlC0gcdglaIwomfbEm9tSe-Sf9mk,9482
dna_decode/data/fungal_amr.py,sha256=K4WZ09CeevzZsuIyQ7KpI7sZAGcmlJBcAKdnBGRzdtM,7788
dna_decode/data/hiv_amr.py,sha256=CuM8WpFZvhOwSmF5Lrz50_FAuwREQQg1X_8YVymNTJA,22337
dna_decode/data/mic_tiers.py,sha256=R9bHAQNnNzZYDFEM8UhLCZF2ZZgcb4WUw7hSHoULwoM,14472
dna_decode/data/pilot.py,sha256=-Oezn5cdXJmqENEuFg45TiZST4yOBUlatzhWbX0WWeM,12201
dna_decode/data/pneumo_breakpoints.py,sha256=dNWxE7EBY2uS2vM791Guk34R75H35K6imdf_H4coOzc,2258
dna_decode/data/refseq.py,sha256=BSRrwr2hHhKncXIgdoFcZDo5n17Wetzt4axdeQUxcwc,8707
dna_decode/data/resistance_db.py,sha256=CPAl2Z3cWgRq5OeczOd2dYAYRbL_TcsUYGPuJyhmztc,5817
dna_decode/data/sarscov2_amr.py,sha256=IcZTq6UiBH1gDPzjYxtwweeVc3DswdIsvAAPYI4z6nA,8862
dna_decode/data/shipped_decoder_surface.py,sha256=mhCxmK_fa5AW9X2UzLvtipS63-VSsY3-cnSozUNWn1I,5711
dna_decode/data/tb_lineage_barcode.py,sha256=kDJisSeHox7nkGfxK7kOUe3fvypkS03xcyGQ8u0WXWA,2616
dna_decode/data/tb_who_catalogue.py,sha256=KUJG01zQHBGdq0USS7ID9M63nAkGfHBZ_F9uIgFvsL4,5830
dna_decode/data/trust_surface.py,sha256=wPoG9HtkoprH-9WXy8-rG_9XdDteJvbGcBZvET5JU-c,15426
dna_decode/disinfinder/__init__.py,sha256=_r8HBW1NHZrI0LMPHiB5q2O80awkZ0VkBewrYAIvUss,505
dna_decode/disinfinder/__main__.py,sha256=WvKqSoU_143xBwsWS3Zc0zM0ZWB3pvn0mRHEoJMkIgk,101
dna_decode/disinfinder/cli.py,sha256=bIxW7-RuxuT5m4AvRZx_tyxAj7NRvAxdUZwQkZsBeXk,4236
dna_decode/disinfinder/runner.py,sha256=JCBmM-SEDmgOtZNcSFqj4UJqHdzhIcDDAesg3eiG2cI,2070
dna_decode/eval/__init__.py,sha256=5-hhYN0wKAmtDIEPl3JdnzkNExp6BwJQp0qwS1vt2rU,426
dna_decode/eval/amr_rules.py,sha256=qYO_KOT_T4kDSxUkBOSew6prOQesgcZwsU5g58_h-tQ,24003
dna_decode/eval/biosample_resolver.py,sha256=wI2omwkFeDRp-LbE6DUg-UnBzpCPpBV6oG635QQvs8E,12743
dna_decode/eval/calibrate_organism.py,sha256=gEgc3EJd1rapL_HNkX8U0lpFMEHY8DEsZbXlCS8xz0w,16982
dna_decode/eval/clade_baseline.py,sha256=5PKvj7xturQv9qYEy5g4BtXkCupsCmZnUPhhDcAsuXA,3721
dna_decode/eval/clonality.py,sha256=HTKmGFYWdxTwo27kMT4lOEMRRj2XItgoXkqca0XB9fU,9394
dna_decode/eval/cohort_deconfound.py,sha256=KVR-yXNJ_lR0xew-lr76eJZGSfXkkcsEQ8bEj0Rqg7w,8754
dna_decode/eval/cohort_manifest.py,sha256=dKNFlALs3r1FyApOt0aMv4vHLTj-bFt2tCa7QaRKgAU,5723
dna_decode/eval/cv.py,sha256=Ie08xsdKo8H5fdf_Jj1P6i_zk5IblhgpSto8UxypLzA,9913
dna_decode/eval/expression_context.py,sha256=pUZE1W2xidbckOJyvYZB26ieeuW5gF65i3A1AH5X6mg,8055
dna_decode/eval/loso_kmer.py,sha256=6ibfScMRgpywf284AnehM-2ApLPt15WdUhQrPG99xjU,8318
dna_decode/eval/metrics.py,sha256=moSIbW0YGGTvQ6mNpxyXWuA3y9mB90IFChPy7L80Tt0,7285
dna_decode/eval/phylogeny.py,sha256=u-aDEb3FOebr_Qs4p8pbSDkR04TOgAXQbYxls-5DiUk,9209
dna_decode/eval/point_baseline.py,sha256=wnhhecoybbI3Nq-60CpvKxMvClk15b-QhbgwrQom_9E,4281
dna_decode/eval/prospective_lock.py,sha256=G4anewvaAaQNVJGX26ERAyHl-fb-Pa6d_axuSiDXBKk,9178
dna_decode/genome_map/__init__.py,sha256=sHW6QMO_OAdnhZUWWk57PkrQ_OhNqAeuLarBxIYd2_s,3019
dna_decode/genome_map/amrfinder.py,sha256=e3vpVp7u0d_ma_fStUdGZ6ahEy7knIttG2GkjTLEO-c,2598
dna_decode/genome_map/annotate.py,sha256=ir0WohaqRf5_Two4vR_nYvZXvCqubh7no1ZOjrC1CVs,2838
dna_decode/genome_map/build_map.py,sha256=RPsKcXWDS71PaIxcMe341lJFOd8v4sb0y2akOGCptRY,17980
dna_decode/genome_map/gate.py,sha256=JMao0BeqHQN5kBaP4qE4nO7QtbkCfqYqqT6qSX1Wuqs,9139
dna_decode/genome_map/ingest.py,sha256=CUit1mvMU1_ZiKin-4wAlo6cQ8dgIlt_L1lYK9wInIc,3377
dna_decode/genome_map/phenotype_overlay.py,sha256=p_57hOXypTlHR39D1j-Npy8vU94Eovu4OLq-oiZ7ZC8,13864
dna_decode/genome_map/tier_vocab.py,sha256=QZp6cZtnklQKVPiUpBMb0OmqyT2NFqvaeg5aS54asxw,1627
dna_decode/genome_map/tiers.py,sha256=HHf9OFOZssMpiSiITwQw1tgQbRZnEnBTXsh2jZxlKeE,3071
dna_decode/genome_map/virulence_overlay.py,sha256=TQWt2J8bcbIqodlor8x5GyZDiw33Sh552v7n1teAZQ8,9259
dna_decode/interp/__init__.py,sha256=xvgrzVfnWqUEPGeQtpWKt-Wp58a1oke4OlBKPq31wXg,263
dna_decode/interp/mutagenesis.py,sha256=w4gKha6Kl7fNgKyYf2-9_b0ku5d17bWYglQdJxAzCNQ,15196
dna_decode/ktype/__init__.py,sha256=1b_e8iZ-cdXM0ziFt1q3hL80n02FG26m7IEQ9Oo1gpw,82
dna_decode/ktype/__main__.py,sha256=KE3d4Umh5gxg1uzwSqpO4emHIXGVsOx7pikKm9wczxg,95
dna_decode/ktype/cli.py,sha256=bwYo3xcXY-XLWg5SmtdDEx8-ZBnKgDqb9U4CVypdpU0,4488
dna_decode/ktype/runner.py,sha256=PhCF_EjaAIxVpS_FLvYOVLc1O4eUOWaZ2JOPIDdVF4c,3968
dna_decode/mlst/__init__.py,sha256=d2xrvlDynJfUiZdHrYMniHCvnT1N5A6MygdONk4ORW4,505
dna_decode/mlst/__main__.py,sha256=MUJ4ghw2skM0ftNaevjXyR0TEF3JUXIjC2ZxR3KZ7vI,94
dna_decode/mlst/cli.py,sha256=kAKcjoqdkZI07J2cJnseUb_iAqLh74onU8AkNUrKJLU,5494
dna_decode/mlst/core.py,sha256=RUnBvXkI38vXHsPZQLowm6fVKv2m5PaL-VHqk-1YB3s,2337
dna_decode/mlst/runner.py,sha256=ehpLCkB4mA4YD5OvjgprA3kzl9KJ3OhFR9XMYTXBppE,2913
dna_decode/models/__init__.py,sha256=Lk3zn6Kr89mXTirSljKjCHVfyK1RDIZNTtg0A9qoTxU,314
dna_decode/models/cache.py,sha256=Fq_dju5SyWUj7ZuVGmK27aN6Ibbn3U5abuBp4oDrdFk,19196
dna_decode/models/classical_baselines.py,sha256=iDOryxVZXydDsCy-ybiX3C4kHYP1mjxqLRqbRgT_MI4,13511
dna_decode/models/classifiers.py,sha256=Rq8h4yJQfPvvF3nwaK3Fwt2rNHeCOM8y2_NuuoBwJEE,8393
dna_decode/models/foundation.py,sha256=RQ2qNIAiR_gpRZDPChknYJ5vJNnVfUVzN64FX8IGanU,15543
dna_decode/organism_rules/__init__.py,sha256=cOaqNLjOlrVtF68kEyUFZGBu4KdCodO4C7-m0UMxIwU,569
dna_decode/organism_rules/pneumo_amr.py,sha256=ioYhGANtFLF0Tc53RTOReiXdKuClN6r8hDIzVg2O0So,4066
dna_decode/organism_rules/pneumo_betalactam.py,sha256=g4FzeVD667tO_qD0r6m6Lgse1h4zm7cHKmPEDgnj6pc,3965
dna_decode/organism_rules/tb_amr.py,sha256=a7CGEg6ntVkrljC9uJhjMHmi4fB722VYQTJEmw4Ye-0,4270
dna_decode/organism_rules/tb_goldset.py,sha256=FaYxY3B-ulcevlTgektTPIefBtlf8fAwcR_MuIX3sG8,5219
dna_decode/organism_rules/tb_lineage.py,sha256=oc4rQT4JkgOD9M-6RyuSdtQB5envL4dLEtfsIqkglec,2522
dna_decode/organism_rules/tb_vcf.py,sha256=3z4Vnylb0OjrIfdS9we5IbHWdKozUhiwaLSElpxYGjE,8046
dna_decode/pathotype/__init__.py,sha256=5nopecSzLKb7ArFrErAbk_6COisAPW-GHpFvbnWXN-c,648
dna_decode/pathotype/__main__.py,sha256=H0wucfmWIH4uou06e4GWKtYGLTrNMsIBQ970N6DPE6k,99
dna_decode/pathotype/cli.py,sha256=wbViAkJ3sYFfrJVVaR-Efz26ZRVDtvqMi94vAWWFrpY,6138
dna_decode/pathotype/detect.py,sha256=bgiITlt7H1nmsjiueNc_v0rt4D3ZRu8Kf3K9GrKlluU,6231
dna_decode/pathotype/expec_score.py,sha256=2VydScDIlFPmuwzLvbbIJwihAXCpXWwVvBMC4DTRC2o,3249
dna_decode/pathotype/markers.py,sha256=2DK8CJ1_NmyCEx56JnKP-mIX1jyFCVX6l_Msfrbn0rQ,4625
dna_decode/pathotype/resolve.py,sha256=qIwbJKhnU6Owi4yhNynY0lti_xpHI5IMRRZyLduEgjE,9768
dna_decode/pathotype/vf_runner.py,sha256=Jb2FV6hcV_5uOlUDxIcDtZ_lW4uO08rE61bEqcd49pU,16722
dna_decode/pgx/__init__.py,sha256=xtUrp23ikrHtC5uMLEmz2EX4X_b8MkY4RLdzCGCmOcQ,561
dna_decode/pgx/__main__.py,sha256=ys-NNpm8gozWqeKDn7jCYNhuvx0V5PJYJS88zS-u4aM,93
dna_decode/pgx/caller.py,sha256=TD4n8ju2Xy7rRr6MZsqZcrAR2tPuRRvqc9FDKT5Cgeo,15133
dna_decode/pgx/cli.py,sha256=3OoXHHBeHpBsAtzoIrTQi1zyUvMpndX5BXvvEM8m_0I,5106
dna_decode/pgx/cyp2c19_catalog.py,sha256=6il8vJ1XGCZrj0Aoi_6bU0OFKq7MdrsVMk8ldUwGIAg,6926
dna_decode/pgx/cyp2c9_catalog.py,sha256=kX03lRPAXCC9HiF_J4LEfHpDKB1zAP-buYGxUWwPBQY,3841
dna_decode/pgx/functional_evidence.py,sha256=4eJN62B2y-mL6GXv7Z__0Inp9LBLI22Yw74Z2BP9hW8,5568
dna_decode/pgx/runner.py,sha256=d0tJycroq83VmJNM6VFQ8YiQKJlBrbtEPAW2J-bkyPY,7513
dna_decode/pgx/vkorc1.py,sha256=9ka9e21FyW1W6t4BuPj1RsZ9khStOJ8TnPHDUQfRJsg,4209
dna_decode/plasmid/__init__.py,sha256=kV0-w9ioSM8R37SqnFi0-WI1P2JDLs-JGz7YoYKSujw,601
dna_decode/plasmid/__main__.py,sha256=nyasYAgBCzg2uVvGqh2jqUNYTbwrLUxzk_yZt0UOa9I,97
dna_decode/plasmid/cli.py,sha256=gyMUnfjdF4NuJPpaw83HgplDQsJOswOzrYkRyh6dVeo,4538
dna_decode/plasmid/runner.py,sha256=WJAyQr2M0Dftn3eDfH16xA8oNOx7DY7TR5B6FcxbHyo,3375
dna_decode/pneumoserotype/__init__.py,sha256=17G9D1taMHiUoTgdo9yFly1BeUMG6jkgoWvUW8x1HGc,463
dna_decode/pneumoserotype/__main__.py,sha256=CtqG646PjutjmdmWxWpE2pC4Bu9WCsnshHFQYDR_42I,104
dna_decode/pneumoserotype/cli.py,sha256=C1j7-5sk8iKeK8FKQw_-ZFJesALSAGfO-GLLl7Tlgmc,4467
dna_decode/pneumoserotype/runner.py,sha256=I2maEJm4MMHqnJrmGZp1dSfJMJoC6POhju9JJ0Bljns,3795
dna_decode/pointfinder/__init__.py,sha256=llDscAaZSPj1PfEfHRQ9ZgcxOC0vRujE89AX7Xxt-v4,572
dna_decode/pointfinder/__main__.py,sha256=y3Y8rcLwpyqWIeZI4DvLzmU7cDOpa-h7X0GKvbCBcd4,101
dna_decode/pointfinder/cli.py,sha256=s6lGJFHNrJbLRu_9Y9iYztldE0YrijF3di95yf7vz6U,5098
dna_decode/pointfinder/runner.py,sha256=-Um9ELwMMJxnWuNdNY78Pebb3d5nyQh23qcYJb8V9s8,6048
dna_decode/profile/__init__.py,sha256=rGcv89amkUvObSzu6D5JduiufISEinb-IPcfvD7hfLg,532
dna_decode/profile/__main__.py,sha256=MABqPJqypT76DlUf7rRlVY-gQe-n3mYMDmdh3oHcIW4,97
dna_decode/profile/cli.py,sha256=kwK0guULg5_9w4dL-8ftDk6XAolFP_rNYUN5uxIfqM0,11637
dna_decode/resfinder/__init__.py,sha256=orjXUu0-ciqjRKYYRAGuNZ4ZnBl3kZLLRnteWt-ZaNI,471
dna_decode/resfinder/__main__.py,sha256=DYY73s0WiNSzIAcR3FZkaeC61JPseuuVGHcPJIpKSY8,99
dna_decode/resfinder/cli.py,sha256=cTgMcOSUT6Iw4CwtUS-mmxaTn1alHxeWyiG3H99xr2k,5231
dna_decode/resfinder/runner.py,sha256=ajAIPDmxTu0F8A2uOuDt4xwt2FCftg0Wc27-eAjrmOI,3115
dna_decode/salmserovar/__init__.py,sha256=VZb0n_rnX8U3SHu4AQpH5mdBpnoJXb6T6vTKvcSG5RM,495
dna_decode/salmserovar/__main__.py,sha256=xPyA5-jBbVEnMJW8JWGPnVyEBLr-lPqv4aHkMm6Sp_8,101
dna_decode/salmserovar/cli.py,sha256=BIppvNBuPjObsDmK8VV14HdX8yKSOtsEyK02TK0u9Aw,4503
dna_decode/salmserovar/runner.py,sha256=PdxXIxpNmtiGAqOSO5CNWhms5avabedONb20SAVVbMU,6259
dna_decode/serotype/__init__.py,sha256=ZIQNc1buB2WWhRIrU6jPn2DB6bTpusKw3RERA2JK1H0,349
dna_decode/serotype/__main__.py,sha256=WzentCdVq2pbUo1vLaxifUzvllOqRQTDepwY4Gmhxso,98
dna_decode/serotype/cli.py,sha256=vdz9VO1DHGDHHYOeYQrUdmDUkL7wxoAugvzje9cyz88,4172
dna_decode/serotype/runner.py,sha256=HNgEsTUoZnDrOlXtvD6V7uQjZTQhRHewrLttp6hcvTk,3439
dna_decode/typing/__init__.py,sha256=8ccrmg0YpDWdQcB9YO7dlChtsETQR3Q5Bo8iKKiGy30,316
dna_decode/typing/blast_caller.py,sha256=nF26S7-nsR6Tcz450KXKXiGP4nsrE-broJ39khblQFY,4876
dna_decode/typing/codon_map.py,sha256=RkjXgFzrBb04HyMEnRjE14XPwesW1-L5rCqeNCUiz8g,2874
dna_decode/viz/__init__.py,sha256=5iZYYwLvmoMiKPVV0c_FAYRwzA9Vqy9VwAGlh0IRvno,153
dna_decode/viz/browser.py,sha256=N5j43E9gj9FcGmtSOcAPnSOxWxfs5-1fyVsNSPiNR-A,5249
dna_decode/report_cards/amr_portal_independent_report_card.json,sha256=hSqAajsl6e7WAo1hOXa05d0YWa0fNZ0TZevI8IE2AAU,12586
dna_decode/report_cards/decoder_validation_report_card.json,sha256=LjfwolF5XMjkykjCQ34CA4-W5IsOm8N3SQ8IswUw89Y,20048
dna_decode/report_cards/hiv_decoder_report_card.json,sha256=_u0gw7BOFEC8cbkgWFmjuItYU4NIkL2AnGlPJPdX3R8,11000
dna_decode/report_cards/tb_report_card.json,sha256=eB6W97j6muJ1zMYX3KUqFpSyZCn__o2a8AQNzk9fy1Q,2241
dna_decode-0.6.4.dist-info/METADATA,sha256=EJP_pY-3RAYrFqSoRt6rb8MOHFnls6h0Fw05lhkGqQA,41294
dna_decode-0.6.4.dist-info/WHEEL,sha256=mffPy8wBnZQn2VnJUU5jE99KsxaSfiyMHV9Yt0aLVxs,87
dna_decode-0.6.4.dist-info/entry_points.txt,sha256=x2eGa4QcAFKfouvRZFqQn1PMMzkLiMKQrsmDVDunko4,717
dna_decode-0.6.4.dist-info/RECORD,,
