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CpGtools Documentation

  • 1. Overview
  • 2. Installation
  • 3. CpGtools Release History

Data Format

  • 1. Input Files and Data Formats

Test and Demo Datasets

  • 1. Pre-compiled datasets

Usage Information

  • 1. CpG_aggregation
  • 2. CpG_anno_position
  • 3. CpG_anno_probe
  • 4. CpG_density_gene_centered
  • 5. CpG_distrb_chrom
  • 6. CpG_distrb_gene_centered
  • 7. CpG_distrb_region
  • 8. CpG_logo
  • 9. CpG_to_gene
  • 10. beta_PCA
  • 11. beta_UMAP
  • 12. beta_combat
  • 13. beta_deconvolution
  • 14. beta_impute
  • 15. beta_jitter_plot
  • 16. beta_m_conversion
  • 17. beta_profile_gene_centered
  • 18. beta_profile_region
  • 19. beta_selectNBest
  • 20. beta_stacked_barplot
  • 21. beta_stats
  • 22. beta_tSNE
  • 23. beta_topN
  • 24. beta_trichotmize
  • 25. dmc_Bayes
  • 26. dmc_bb
  • 27. dmc_fisher
  • 28. dmc_glm
  • 29. dmc_logit
  • 30. dmc_nonparametric
  • 31. dmc_ttest
  • 32. epical
  • 33. predict_sex

Compare Differential Analysis Tools

  • 1. Compare Differential CpG Analysis Tools
  • 2. P-value distributions

Liscense

  • MIT License

Reference

  • Reference
CpGtools
  • Search

© Copyright 2024-2026, Liguo Wang. Last updated on August 12, 2026.