smftools/__init__.py,sha256=aZlrZBVexf_nEnzQeZu7NU_Kp6OnxcYpLo1KPImi7sI,599
smftools/_settings.py,sha256=Ed8lzKUA5ncq5ZRfSp0t6_rphEEjMxts6guttwTZP5Y,409
smftools/_version.py,sha256=X0PliCRFAeVnSTceUeHX1eM0j1HFhGFDWCRxLdde2Bs,21
smftools/cli_entry.py,sha256=_QdtEKcVK5o-e5s9ETB9sOIdftPVlrDxvvjBKcP6YNk,14680
smftools/readwrite.py,sha256=ExKZHNZ0QB-PtSck08drXfHTqbPeSUTHiYhv951SH1s,45994
smftools/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
smftools/cli/cli_flows.py,sha256=xRiFUThoAL3LX1xdXaHVg4LjyJI4uNpGsc9aQ_wVCto,4941
smftools/cli/hmm_adata.py,sha256=PApUJW0lO4kcLjsiqqQopXgL3Dg-AascIqJrgvSY1Rg,15916
smftools/cli/load_adata.py,sha256=Qt1ej-osyJ47fpBkGaSDgR1F8E4aBNAdcXeBAGM-Lqg,29100
smftools/cli/preprocess_adata.py,sha256=EKGbSTli7qvL44OQUmMalYJjsH9vn3w4Rx7U7BL0ybs,20991
smftools/cli/spatial_adata.py,sha256=AX6iyBfbXud9actteTvDuaQUU_SE3SyBIeknR317g34,30212
smftools/config/__init__.py,sha256=ObUnnR7aRSoD_uvpmsxA_BUFt4NOOfWNopDVCqjp7tg,69
smftools/config/conversion.yaml,sha256=HrFz2f9QRe1RuhmgU6ZtMHaM4ZzY61_aLcugsmpV40Q,969
smftools/config/deaminase.yaml,sha256=mw2aY222y2xg08Rs5CWvjlrXo3vaEim7JwBThA80y4o,1349
smftools/config/default.yaml,sha256=3IrX0OrUyjhVc3CqTjM8uiprKWrrBdVtil4YhtVzKdQ,10233
smftools/config/direct.yaml,sha256=SBhdtG7PKm-z5xxQmA7JV3NQsGnUJ4p58fGH8BnoMrM,2137
smftools/config/discover_input_files.py,sha256=G9vyAmK_n_8Ur5dOnumevVLG3ydHchMy_JQrJdiuuz0,3892
smftools/config/experiment_config.py,sha256=d_6f_Uv3CY-1orHbxpHtAZDsY2gwxw079_pNgR9wDUg,58837
smftools/datasets/F1_hybrid_NKG2A_enhander_promoter_GpC_conversion_SMF.h5ad.gz,sha256=q6wJtgFRDln0o20XNCx1qad3lwcdCoylqPN7wskTfI8,2926497
smftools/datasets/F1_sample_sheet.csv,sha256=9PodIIOXK2eamYPbC6DGnXdzgi9bRDovf296j1aM0ak,259
smftools/datasets/__init__.py,sha256=xkSTlPuakVYVCuRurif9BceNBDt6bsngJvvjI8757QI,142
smftools/datasets/dCas9_m6A_invitro_kinetics.h5ad.gz,sha256=niOcVHaYY7h3XyvwSkN-V_NMBaRt2vTP5TrJO0CwMCs,8385050
smftools/datasets/datasets.py,sha256=0y597Ntp707bOgDwN6O-JEt9yxgplj66p0aj6Zs_IB4,779
smftools/hmm/HMM.py,sha256=K8rt-EHn3ylIHpQ3dHf_OZCXxCBVSS2UWTgSGOatwHw,71046
smftools/hmm/__init__.py,sha256=BkX145eGVy-kFOtyqOcu-Hzv9ZJLDQ3cfDe51eKBTwY,585
smftools/hmm/apply_hmm_batched.py,sha256=BBeJ8DiIuuMWzLwtDdk2DO2vvrfLCrVe4JtRYPFItIU,10648
smftools/hmm/calculate_distances.py,sha256=KDWimQ6u-coyxCKrbTm42Fh_Alf_gURBZ0vfFaem848,644
smftools/hmm/call_hmm_peaks.py,sha256=T-3Ld8H4t3Mgg2whBTYP9s2QL7rY-9RIzVCgB6avKhE,4625
smftools/hmm/display_hmm.py,sha256=3WuQCPvM3wPfzAdgbhfiBTd0g5mQdx9HTUdqAxs2aj4,825
smftools/hmm/hmm_readwrite.py,sha256=DjJ3hunpBQ7N0GVvxL7-0QUas_SkA88LVgL72mVK2cI,359
smftools/hmm/nucleosome_hmm_refinement.py,sha256=nQWimvse6dclcXhbU707rGbRVMKHM0mU_ZhH9g2yCMA,4641
smftools/hmm/train_hmm.py,sha256=srzRcB9LEmNuHyBM0R5Z0VEnxecifQt-MoaJhADxGT8,2477
smftools/informatics/__init__.py,sha256=vLvSrCtCVYRUCCNLW7fL3ltPr3h_w8FhT--V6el3ZkQ,1191
smftools/informatics/bam_functions.py,sha256=otgl3TRPLn5Fnsx1jXX75du90k3XB3RHGzlfamvETsU,32670
smftools/informatics/basecalling.py,sha256=jc39jneaa8Gt1azutHgBGWHqCoPeTVSGBu3kyQwP7xM,3460
smftools/informatics/bed_functions.py,sha256=uETVxT5mRWDNn7t0OqhDi8kDiq7uDakeHB1L2JsP4PA,13377
smftools/informatics/binarize_converted_base_identities.py,sha256=yOepGaNBGfZJEsMiLRwKauvsmaHn_JRrxaGp8LmKAXs,7778
smftools/informatics/complement_base_list.py,sha256=k6EkLtxFoajaIufxw1p0pShJ2nPHyGLTbzZmIFFjB4o,532
smftools/informatics/converted_BAM_to_adata.py,sha256=Y2kQNWly0WjjGN9El9zL1nLfjVxmPLWONvX5VNgZUh0,22554
smftools/informatics/fasta_functions.py,sha256=5IfTkX_GIj5gRJB9PjL_WjyEktpBHwGsmS_nnO1ETjI,9790
smftools/informatics/h5ad_functions.py,sha256=iAOxJjhaDslTUC78kjUHlCELigDl73sWo0fvXcKuFoI,7824
smftools/informatics/modkit_extract_to_adata.py,sha256=TrgrL_IgfqzNJ9qZ_2EvF_B38_Syw8mP38Sl7v0Riwo,55278
smftools/informatics/modkit_functions.py,sha256=lywjeqAJ7Cdd7k-0P3YaL_9cAZvEDTDLh91rIRcSMWE,5604
smftools/informatics/ohe.py,sha256=MEmh3ps-ZSSyXuIrr5LMzQvCsDJRCYiy7JS-WD4TlYs,5805
smftools/informatics/pod5_functions.py,sha256=vxwhD_d_iWpJydIpbf0uce7VGHm8sBnCwb7tLNpYBc8,9859
smftools/informatics/run_multiqc.py,sha256=n6LvQuGQpLfsutVGmgvHfV0SV5PqTQ8wa_SeKOjRssM,1052
smftools/informatics/archived/bam_conversion.py,sha256=I8EzXjQixMmqx2oWnoNSH5NURBhfT-krbWHkoi_M964,3330
smftools/informatics/archived/bam_direct.py,sha256=jbEFtUIiUR8Wlp3po_sWkr19AUNS9WZjglojb9j28vo,3606
smftools/informatics/archived/basecall_pod5s.py,sha256=Ynmxscsxj6qp-zVY0RWodq513oDuHDaHnpqoepB3RUU,3930
smftools/informatics/archived/basecalls_to_adata.py,sha256=-Nag6lr_NAtU4t8jo0GSMdgIAIfmDge-5VEUPQbEatE,3692
smftools/informatics/archived/conversion_smf.py,sha256=QhlISVi3Z-XqFKyDG_CenLojovAt5-ZhuVe9hus36lg,7177
smftools/informatics/archived/deaminase_smf.py,sha256=mNeg1mIYYVLIiW8powEpz0CqrGRDsrmY5-aoIgwMGHs,7221
smftools/informatics/archived/direct_smf.py,sha256=ylPGFBvRLdxLHeDJjAwq98j8Q8_lfGK3k5JJnQxrwJw,7485
smftools/informatics/archived/fast5_to_pod5.py,sha256=TRG_FYYGCGWUPzZCt0ZqzB8gQv_HKvkssp9nTctWzXU,1398
smftools/informatics/archived/print_bam_query_seq.py,sha256=8Z2ZJEOOlfWYUXiZGjteLWU4yTgvV8KQzEIBHUmamGM,838
smftools/informatics/archived/subsample_fasta_from_bed.py,sha256=7YTKhXg_mtP4KWpnD-TB4nuFEL4crOa9_d84IJKllyQ,1633
smftools/informatics/archived/subsample_pod5.py,sha256=zDw9tRcrFRmPI62xkcy9dh8IfsJcuYm7R-FVeBC_g3s,4701
smftools/informatics/archived/helpers/archived/__init__.py,sha256=DiiBerFJAxZeG5y0ScpJSaVBJ8b4XWdfEJCh8Q7k8jU,2783
smftools/informatics/archived/helpers/archived/align_and_sort_BAM.py,sha256=yaRfhQDh3HpsSTme6QnSqBgElCS0kv2G6TunhvR1weY,5493
smftools/informatics/archived/helpers/archived/aligned_BAM_to_bed.py,sha256=N3NAOaoSt_M4V48vtTP_m_iF1tRuNIPS_uNJ3Y0IA4E,3391
smftools/informatics/archived/helpers/archived/bam_qc.py,sha256=PWl3dViCHGOcjB4UKkxBFz34Gc0PXHVTHjpYVNckVH0,7975
smftools/informatics/archived/helpers/archived/bed_to_bigwig.py,sha256=Bg9wFsavUU9Ha57n_99vYlYpVcbDUz3tLtYJ7ZFVR9k,2986
smftools/informatics/archived/helpers/archived/canoncall.py,sha256=5WS6lwukc_xYTdPQy0OSj-WLbx0Rg70Cun1lCucY7w8,1741
smftools/informatics/archived/helpers/archived/concatenate_fastqs_to_bam.py,sha256=6GTHXG1dfaC8rBin5NthG3xgyGqOsT6wIGxJVCmCq58,9774
smftools/informatics/archived/helpers/archived/converted_BAM_to_adata.py,sha256=sRmOtn0kNosLYfogqslDHg1Azk51l6nfNOLgQOnQjlA,14591
smftools/informatics/archived/helpers/archived/count_aligned_reads.py,sha256=ZF_kkzAf1RvM4PwDYhxD36UiuVuMM_MBvZgiXom1NQ0,2176
smftools/informatics/archived/helpers/archived/demux_and_index_BAM.py,sha256=KmU7nqGQ-MfDrp8h3txbToGn4h95Rkvg0WEiuext-vY,2000
smftools/informatics/archived/helpers/archived/extract_base_identities.py,sha256=CaFqNBjkDujYlyiUnOeRock1OQWs3CeiD3yTL96sjIs,3043
smftools/informatics/archived/helpers/archived/extract_mods.py,sha256=Mrs7mrLFgCTiRGfPFSyvJm6brq--LGzZrNDiFB-jynI,3895
smftools/informatics/archived/helpers/archived/extract_read_features_from_bam.py,sha256=SYAb4Q1HxiJzCx5bIz86MdH_TvVPsRAVodZD9082HGY,1491
smftools/informatics/archived/helpers/archived/extract_read_lengths_from_bed.py,sha256=Cw39wgp1eBTV45Wk1l0c9l-upBW5N2OcgyWXTAXln90,678
smftools/informatics/archived/helpers/archived/extract_readnames_from_BAM.py,sha256=3FxSNqbZ1VsOK2RfHrvevQTzhWATf5E8bZ5yVOqayvk,759
smftools/informatics/archived/helpers/archived/find_conversion_sites.py,sha256=JPlDipmzeCBkV_T6esGD5ptwmbQmk8gJMTh7NMaSYd4,2480
smftools/informatics/archived/helpers/archived/generate_converted_FASTA.py,sha256=Us6iH1cIhsXDnTvDxI-FEHB6ndbB30hd1ss-9dIoWVE,3819
smftools/informatics/archived/helpers/archived/get_chromosome_lengths.py,sha256=BEroXshYSpjf5wt_vrEAFiTJmSuf-kvD-Z1B_1gusME,1000
smftools/informatics/archived/helpers/archived/get_native_references.py,sha256=fRuyEm9UJkfd5DwHmFb1bxEtNvtSI1_BxGRmrCymGkw,981
smftools/informatics/archived/helpers/archived/index_fasta.py,sha256=w6xHFSaoXVk-YWZWftZ9Xv8rywZ_IuuIouLQ12KL3ro,779
smftools/informatics/archived/helpers/archived/informatics.py,sha256=gKb2ZJ_LcAeEXuQqn9e-QDF_sS4tMpMTr2vZlqa7n54,14572
smftools/informatics/archived/helpers/archived/load_adata.py,sha256=DhvYYqO9VLsZqhL1WjN9sd-e3fgvdXGlgTP18z1h0L0,33654
smftools/informatics/archived/helpers/archived/make_modbed.py,sha256=Wh0UCSOL4fMZbWYK-3oGGHwJtqPurJ3Bl6wJWBaTXoM,923
smftools/informatics/archived/helpers/archived/modQC.py,sha256=pz2EscFgO-j-9dfNgNDseweXXqM5-a-Rj2abBLErLd0,1051
smftools/informatics/archived/helpers/archived/modcall.py,sha256=LVPrdMNVp2gyQTJ4BNp8NJNm89AueDjsKaY7Gqkluho,1777
smftools/informatics/archived/helpers/archived/ohe_batching.py,sha256=QVOiyl9fYHNIFWM23afYnQo0uaOjf1NR3ASKGVSrmuw,2975
smftools/informatics/archived/helpers/archived/ohe_layers_decode.py,sha256=gIgUC9L8TFLi-fTnjR4PRzXdUaH5D6WL2Hump6XOoy0,1042
smftools/informatics/archived/helpers/archived/one_hot_decode.py,sha256=3n4rzY8_aC9YKmgrftsguMsH7fUyQ-DbWmrOYF6la9s,906
smftools/informatics/archived/helpers/archived/one_hot_encode.py,sha256=5hHigA6-SZLK84WH_RHo06F_6aTg7S3TJgvSr8gxGX8,1968
smftools/informatics/archived/helpers/archived/plot_bed_histograms.py,sha256=78i0mYFuElTPGA2Dt1feO6Z4Grh1Nro3m-F8D5FRBOw,9914
smftools/informatics/archived/helpers/archived/separate_bam_by_bc.py,sha256=pCLev0OQji1jBdVr25lI_gt9fsozSG8vh7TQkE_UHnY,1800
smftools/informatics/archived/helpers/archived/split_and_index_BAM.py,sha256=Q7I5qJ5JjW6mSKysfl9NdlFZ6LIy3C8G5rGmG7cn2eA,1224
smftools/machine_learning/__init__.py,sha256=cWyGN_QVcssqBr_VVr7xh2Inz0P7ylqUmBBcpMgsK0k,257
smftools/machine_learning/data/__init__.py,sha256=xbfLE-gNjdgxvZ9LKTdvjAtbIHOcs2TR0Gz3YRFbo38,113
smftools/machine_learning/data/anndata_data_module.py,sha256=ktrdMVMk5yhIUrnu-G_Xf3y7G-KP9PyhYZhobv8TCVg,10063
smftools/machine_learning/data/preprocessing.py,sha256=dSs6Qs3wmlccFPZSpOc-uy1nlFSf68wWQKwF1iTqMok,137
smftools/machine_learning/evaluation/__init__.py,sha256=KHvcC7bTYv-ThptAi6G8wD-hW5Iz1HPgMcQ3AewtK3c,122
smftools/machine_learning/evaluation/eval_utils.py,sha256=t9WIevIJ6b6HqU6OYaNx7UBAa5TEIPFmZow6n_ZDZeY,1105
smftools/machine_learning/evaluation/evaluators.py,sha256=KqYHqbVV2WOs0Yo4GIhLS_0h1oKY6nd1yi6piDWYQLg,8184
smftools/machine_learning/inference/__init__.py,sha256=vWLQD-JNEKKNGuzDtx7vcE4czKKXEO6S-0Zp5-21fPs,172
smftools/machine_learning/inference/inference_utils.py,sha256=aJuXvTgC8v4BOjLCgOU9vT3S2y1UGoZjq4mQpPswTQU,947
smftools/machine_learning/inference/lightning_inference.py,sha256=34WVnPfpPDf4KM8ZN5MOsx4tYgsrUclkens6GXgB4Ek,2160
smftools/machine_learning/inference/sklearn_inference.py,sha256=FomgQF5jFBfAj1-H2Q0_RPmvR9rDJsmUeaWOVRhbpTw,1612
smftools/machine_learning/inference/sliding_window_inference.py,sha256=8zjQs2hGhj0Dww4gWljLVK0g002_U96dyIqQJiDdSDY,4426
smftools/machine_learning/models/__init__.py,sha256=bMfPbQ5bDmn_kWv82virLuUhjb12Yow7t_j96afNbyA,421
smftools/machine_learning/models/base.py,sha256=p3d77iyY8BVx0tYL0TjmOSnPNP1ZrKTzn_J05e2GF0A,9626
smftools/machine_learning/models/cnn.py,sha256=KKZmJLQ6Bjm_HI8GULnafjz6mRy5BZ6Y0ZCgDSuS268,4465
smftools/machine_learning/models/lightning_base.py,sha256=3nC3wajPIupFMtOq3YUf24_SHvDoW_9BIGyIvEwzN9w,13626
smftools/machine_learning/models/mlp.py,sha256=Y2hc_qHj6vpM_mHpreFxBULn4MkR25oEA1LXu5sPA_w,820
smftools/machine_learning/models/positional.py,sha256=EfTyYnY0pCB-aVJIWf-4DVNpyGlvx1q_09PzfrC-VlA,652
smftools/machine_learning/models/rnn.py,sha256=uJnHDGpT2_l_HqHGsx33XGF3v3EYZPeOtSQ89uvhdpE,717
smftools/machine_learning/models/sklearn_models.py,sha256=ssV-mR3rmcjycQEzKccRcbVaEjZp0zRNUL5-R6m1UKU,10402
smftools/machine_learning/models/transformer.py,sha256=8YXS0vCcOWT-33h-8yeDfFM5ibPHQ-CMSEhGWzR4pm8,11039
smftools/machine_learning/models/wrappers.py,sha256=HEY2A6-Bk6MtVZ9jOaPT8S1Qi0L98SyEg1nbKqYZoag,697
smftools/machine_learning/training/__init__.py,sha256=teUmwpnmAl0oNFaqVrfoijEpxBjLwI5YtBwLHT3uXck,185
smftools/machine_learning/training/train_lightning_model.py,sha256=usEBaQ4vNjfatefP5XDCXkywzgZ2D-YppGmT3-3gTGE,4070
smftools/machine_learning/training/train_sklearn_model.py,sha256=m1k1Gsynpj6SJI64rl4B3cfXm1SliU0fwMAj1-bAAeE,3166
smftools/machine_learning/utils/__init__.py,sha256=yOpzBc9AXbarSRfN8Ixh2Z1uWLGpgpjRR46h6E46_2w,62
smftools/machine_learning/utils/device.py,sha256=GITrULOty2Fr96Bqt1wi1PaYl_oVgB5Z99Gfn5vQy4o,274
smftools/machine_learning/utils/grl.py,sha256=BWBDp_kQBigrUzQpRbZzgpfr_WOcd2K2V3MQL-aAIc4,334
smftools/plotting/__init__.py,sha256=7T3-hZFgTY0nfQgV4J6Vn9ogwkNMlY315kguZR7V1AI,866
smftools/plotting/autocorrelation_plotting.py,sha256=cF9X3CgKiwzL79mgMUFO1tSqdybDoPN1COQQ567InCY,27455
smftools/plotting/classifiers.py,sha256=8_zabh4NNB1_yVxLD22lfrfl5yfzbEoG3XWqlIqdtrQ,13786
smftools/plotting/general_plotting.py,sha256=2JzE7agm_tILpQ67BHs5pdyPRsHBwcENZe7n4gfMWgM,61350
smftools/plotting/hmm_plotting.py,sha256=3Eq82gty_0b8GkSMCQgUlbKfzR9h2fJ5rZkB8yYGX-M,10934
smftools/plotting/position_stats.py,sha256=4XukYIWeWZ_aGSZg1K0t37KA2aknjNNKT5kcKFfuz8Q,17428
smftools/plotting/qc_plotting.py,sha256=q5Ri0q89udvNUFUNxHzgk9atvQYqUkqkS5-JFq9EqoI,10045
smftools/preprocessing/__init__.py,sha256=GAQBULUH7fGVabzK5Cq5Wj-0ew0vNA-jWQtR5LAowvs,1746
smftools/preprocessing/add_read_length_and_mapping_qc.py,sha256=zD_Kxw3DvyOypfuSMGv0ESyt-02w4XlAAMqQxb7yDNQ,5700
smftools/preprocessing/append_base_context.py,sha256=wGBAADePnys8DLUR15MpRe2BUcfCMDJWaCDDNyjn6AU,6209
smftools/preprocessing/append_binary_layer_by_base_context.py,sha256=s-7t-VKCs9Y67pX7kH6DNCEkC-RW4nM-UPsBQV2ZwtE,6186
smftools/preprocessing/binarize.py,sha256=6Vr7Z8zgtJ5rS_uPAx1n3EnQR670V33DlZ_95JmOeWc,484
smftools/preprocessing/binarize_on_Youden.py,sha256=HGs4p7XiOSYU3_z8QswNHIA9HlrI-7Pp1Kggrn6yUnI,1834
smftools/preprocessing/binary_layers_to_ohe.py,sha256=Lxd8knelNTaUozfGMFNMlnrOb6uP28Laj3Ymw6cRHL0,1826
smftools/preprocessing/calculate_complexity.py,sha256=cXMpFrhkwkPipQo2GZGT5yFknMYUMt1t8gz0Cse1DrA,3288
smftools/preprocessing/calculate_complexity_II.py,sha256=DGfl0jkuBPUpzhKVItN0W7EPzh-QYuR4IxRObPE6gAQ,9301
smftools/preprocessing/calculate_consensus.py,sha256=6zRpRmb2xdfDu5hctZrReALRb7Pjn8sy8xJZTm3o0nU,2442
smftools/preprocessing/calculate_coverage.py,sha256=4WTILzKLzxGLSsQrZkshXP-IRQpoVu3Fkqc0QTpux3Y,2132
smftools/preprocessing/calculate_pairwise_differences.py,sha256=5zJbNNaFld5qgKRoPyplCmMHflbvAQ9eKWCXPXPpJ60,1774
smftools/preprocessing/calculate_pairwise_hamming_distances.py,sha256=e5Mzyex7pT29H2PY014uU4Fi_eewbut1JkzC1ffBbCg,961
smftools/preprocessing/calculate_position_Youden.py,sha256=yaSd6UDXPCddoN1UR6LgTqE5teJ79Ldw0BAlemc9fB4,7453
smftools/preprocessing/calculate_read_length_stats.py,sha256=gNNePwMqYZJidzGgT1ZkfSlvc5Y3I3bi5KNYpP6wQQc,4584
smftools/preprocessing/calculate_read_modification_stats.py,sha256=mIlLBqNflVIkuoLxhbyujq3JEKyPl8iebhUlikB9brM,4775
smftools/preprocessing/clean_NaN.py,sha256=IOcnN5YF05gpPQc3cc3IS83petCnhCpkYiyT6bXEyx0,1937
smftools/preprocessing/filter_adata_by_nan_proportion.py,sha256=GZcvr2JCsthX8EMw34S9-W3fc6JElw6ka99Jy6f2JvA,1292
smftools/preprocessing/filter_reads_on_length_quality_mapping.py,sha256=93LgTy_vsPnOZgoiXhZ1-w_pix2oFdBk-dsBUoz33Go,7379
smftools/preprocessing/filter_reads_on_modification_thresholds.py,sha256=4TUvChkSH8R4p_0TpRCh7TounkdUgQHh71TGNmsZ29A,19355
smftools/preprocessing/flag_duplicate_reads.py,sha256=MySI9En6xVp0FqL7hfiLw0EP3JnGVJWM_yZfkvN-m1U,65585
smftools/preprocessing/invert_adata.py,sha256=HYMJ1sR3Ui8j6bDjY8OcVQOETzZV-_rrpIYaWLZL6S4,1049
smftools/preprocessing/load_sample_sheet.py,sha256=AjJf2MrqGHJJ2rNjYi09zV1QkLTq8qGaHGVklXHnPuU,1908
smftools/preprocessing/make_dirs.py,sha256=lWHXpwC76MFM5sSme9i_WeYUaxutzybendokhny03ds,537
smftools/preprocessing/min_non_diagonal.py,sha256=hx1asW8CEmLaIroZISW8EcAf_RnBEC_nofGD8QG0b1E,711
smftools/preprocessing/recipes.py,sha256=cfKEpKW8TtQLe1CMdSHyPuIgKiWOPn7uP6uMIoRlnaQ,7063
smftools/preprocessing/subsample_adata.py,sha256=ivJvJIOvEtyvAjqZ7cwEeVedm4QgJxCJEI7sFaTuI3w,2360
smftools/preprocessing/archives/mark_duplicates.py,sha256=kwfstcWb7KkqeNB321dB-NLe8yd9_hZsSmpL8pCVBQg,8747
smftools/preprocessing/archives/preprocessing.py,sha256=4mLT09A7vwRZ78FHmuwtv38mH9TQ9qrZc_WjHRhhkIw,34379
smftools/preprocessing/archives/remove_duplicates.py,sha256=Erooi5_1VOUNfWpzddzmMNYMCl1U1jJryt7ZtMhabAs,699
smftools/tools/__init__.py,sha256=QV3asy5_lP9wcRzpNTfxGTCcpykkbNYvzxSMpFw4KXU,719
smftools/tools/calculate_umap.py,sha256=2arbAQdFOtnWoPq22TWicyr6fLYZ5PTNeZv_jdwuk_I,2491
smftools/tools/cluster_adata_on_methylation.py,sha256=UDC5lpW8fZ6O-16ETu-mbflLkNBKuIg7RIzQ9r7knvA,5760
smftools/tools/general_tools.py,sha256=YbobB6Zllz6cUq50yolGH9Jr6uuAMvEI4m3hiJ6FmAI,2561
smftools/tools/position_stats.py,sha256=Z7VW54wUVzH1RQ9xhP6KO7ewp-xeLybd07I5umV_aqM,24369
smftools/tools/read_stats.py,sha256=w3Zaim6l__Kt8EPCJKXTlMgO51Iy2Milj6yUb88HXiI,6324
smftools/tools/spatial_autocorrelation.py,sha256=uQkuPi2PJCj5lZzb33IWTL-e-p3J6PdMeM88rUFfQRw,21212
smftools/tools/subset_adata.py,sha256=nBbtAxCNteZCUBmPnZ9swQNyU74XgWM8aJHHWg2AuL0,1025
smftools/tools/archived/apply_hmm.py,sha256=pJXCULay0zbmubrwql368y7yiHAZr2bJhuGx2QUuKnE,9321
smftools/tools/archived/classifiers.py,sha256=mwSTpWUXBPjmUuV5i_SMG1lIPpHSMCzsKhl8wTbm-Og,36903
smftools/tools/archived/classify_methylated_features.py,sha256=Z0N2UKw3luD3CTQ8wcUvdnMY7w-8574OJbEcwzNsy88,2897
smftools/tools/archived/classify_non_methylated_features.py,sha256=IJERTozEs7IPL7K-VIjq2q2K36wRCW9iiNSYLAXasrA,3256
smftools/tools/archived/subset_adata_v1.py,sha256=qyU9iCal03edb5aUS3AZ2U4TlL3uQ42jGI9hX3QF7Fc,1047
smftools/tools/archived/subset_adata_v2.py,sha256=OKZoUpvdURPtckIQxGTWmOI5jLa-_EU62Xs3LyyehnA,1880
smftools-0.2.3.dist-info/METADATA,sha256=w_PRsBPndPoTQZviW9WTuiZV1Pk3ukeJ155OvC4E57M,8787
smftools-0.2.3.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
smftools-0.2.3.dist-info/entry_points.txt,sha256=q4hg4w-mKkI2leekM_-YZc5XRJzp96Mh1FcU3hac82g,52
smftools-0.2.3.dist-info/licenses/LICENSE,sha256=F8LwmL6vMPddaCt1z1S83Kh_OZv50alTlY7BvVx1RXw,1066
smftools-0.2.3.dist-info/RECORD,,
