.gitignore
.readthedocs.yaml
CHANGELOG.rst
CODE_OF_CONDUCT.rst
LICENSE
MANIFEST.in
README.rst
pyproject.toml
.github/workflows/pypi_release.yaml
.github/workflows/tests.yaml
docs/Makefile
docs/README.md
docs/build_docs
docs/conf.py
docs/index.html
docs/index.rst
docs/overview.rst
docs/requirements.txt
docs/tutorials.rst
docs/variables.txt
docs/whats-new.rst
docs/_static/theme_overrides.css
docs/_templates/custom-class-template.rst
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docs/_templates/custom-module-template.rst
docs/_templates/footer_end.html
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docs/_templates/navbar-side.html
docs/_templates/page.html
docs/api/index.rst
docs/images/favicon.ico
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docs/tutorials/README.rst
docs/tutorials/clean_outputs
docs/tutorials/example_cancer_cases.csv
docs/tutorials/nigeria_cancer_cases.csv
docs/tutorials/nigeria_cancer_types.csv
docs/tutorials/south_africa_age_pyramid.csv
docs/tutorials/tut_analyzers.ipynb
docs/tutorials/tut_calibration.ipynb
docs/tutorials/tut_interventions.ipynb
docs/tutorials/tut_intro.ipynb
docs/tutorials/tut_people.ipynb
docs/tutorials/tut_plotting.ipynb
docs/tutorials/tut_running.ipynb
examples/t05_screen_algorithms.py
hpvsim/__init__.py
hpvsim/analysis.py
hpvsim/base.py
hpvsim/calibration.py
hpvsim/defaults.py
hpvsim/hiv.py
hpvsim/immunity.py
hpvsim/interventions.py
hpvsim/misc.py
hpvsim/parameters.py
hpvsim/people.py
hpvsim/plotting.py
hpvsim/population.py
hpvsim/run.py
hpvsim/settings.py
hpvsim/sim.py
hpvsim/utils.py
hpvsim/version.py
hpvsim.egg-info/PKG-INFO
hpvsim.egg-info/SOURCES.txt
hpvsim.egg-info/dependency_links.txt
hpvsim.egg-info/entry_points.txt
hpvsim.egg-info/requires.txt
hpvsim.egg-info/top_level.txt
hpvsim/data/__init__.py
hpvsim/data/downloaders.py
hpvsim/data/loaders.py
hpvsim/data/products_dx.csv
hpvsim/data/products_tx.csv
hpvsim/data/products_txvx.csv
hpvsim/data/products_vx.csv
hpvsim/data/test_downloaders.py
hpvsim/data/test_loaders.py
hpvsim/regression/pars_v0.2.6.json
hpvsim/regression/pars_v0.2.9.json
hpvsim/regression/pars_v0.3.0.json
hpvsim/regression/pars_v0.3.1.json
tests/.coveragerc
tests/README.rst
tests/baseline.json
tests/benchmark.json
tests/benchmark_profile.py
tests/check_coverage
tests/hpvsim_v1.2.2.yml
tests/pytest.ini
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tests/run_tests
tests/simple.py
tests/test_analysis.py
tests/test_baselines.py
tests/test_calibration.py
tests/test_data.py
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tests/test_interventions.py
tests/test_run.py
tests/test_sim.py
tests/update_baseline
tests/devtests/check_hiv_data.py
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tests/devtests/multiscale_concept1.py
tests/devtests/multiscale_concept2.py
tests/devtests/multiscale_concept3.py
tests/devtests/multiscale_test.df
tests/devtests/mysql_hpvsim_test.py
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tests/devtests/plot_nathx.py
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tests/devtests/test_cancer_dysp.py
tests/devtests/test_dt.py
tests/devtests/test_hiv.py
tests/devtests/test_latency.py
tests/devtests/test_logistic.py
tests/devtests/test_merge_scens.py
tests/devtests/test_multiscale.py
tests/devtests/test_multiscale_pars.py
tests/devtests/test_networks.py
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tests/devtests/test_parameter_exploration.py
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tests/devtests/test_popscale.py
tests/devtests/test_sampler.py
tests/devtests/test_txvx.py
tests/devtests/tut_parameter_exploration.ipynb
tests/test_data/RSA_data.csv
tests/test_data/art_coverage_south_africa.csv
tests/test_data/australia_age_pyramid.csv
tests/test_data/hiv_incidence_south_africa.csv
tests/test_data/india_cancer_cases.csv
tests/test_data/india_cancer_deaths.csv
tests/test_data/india_cancer_types.csv
tests/test_data/india_cin_types.csv
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tests/test_data/kenya_age_pyramid.csv
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tests/test_data/kenya_cancer_mortality.csv
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tests/test_data/south_africa_age_pyramid.csv
tests/test_data/south_africa_art_coverage_by_age_females.csv
tests/test_data/south_africa_art_coverage_by_age_males.csv
tests/test_data/south_africa_cancer_data_2020.csv
tests/test_data/south_africa_cancer_data_hiv_2020.csv
tests/test_data/south_africa_cancer_incidence_by_age_no_hiv.csv
tests/test_data/south_africa_cancer_incidence_by_age_with_hiv.csv
tests/test_data/south_africa_female_hiv_mortality.csv
tests/test_data/south_africa_hpv_data.csv
tests/test_data/south_africa_male_hiv_mortality.csv
tests/test_data/south_africa_target_data.csv
tests/test_data/south_africa_type_distribution_cancer.csv
tests/test_data/south_africa_type_distribution_high_grade_lesion.csv
tests/test_data/tanzania_age_pyramid.csv
tests/test_data/tanzania_data.csv
tests/test_data/test_tx_assigner.csv
tests/test_data/test_via.csv
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