# Core runtime dependencies
numpy>=2.0.0,<3.0.0
pandas>=2.1.4
scanpy>=1.10.2,<2.0.0
anndata>=0.10.0,<1.0.0
matplotlib>=3.7.0,<4.0.0
seaborn>=0.13,<1.0.0
pyyaml>=6.0,<7.0
tqdm>=4.60.0,<5.0.0

# Optional extras live in pyproject.toml:
#   assembly -> pyensembl
#   excel -> openpyxl
#   reports -> reportlab, pdfkit
