# Essential packages
anndata>=0.10.0
biopython>=1.79
captum
click
fastcluster
hydra-core
leidenalg
lightning
igraph
leidenalg
lightning
multiqc
networkx>=3.2
numpy>=1.22.0,<2
omegaconf
pandas>=1.4.2
pod5>=0.1.21
pybedtools>=0.12.0
pyBigWig>=0.3.24
pyfaidx>=0.8.0
pysam>=0.19.1
scanpy>=1.11
scikit-learn>=1.0.2
scipy>=1.7.3
seaborn>=0.11
shap
torch>=1.9.0
tqdm
upsetplot
wandb
