Wraps command camino_to_trackvis
Wraps camino_to_trackvis from Camino-Trackvis
Convert files from camino .Bfloat format to trackvis .trk format.
>>> import nipype.interfaces.camino2trackvis as cam2trk
>>> c2t = cam2trk.Camino2Trackvis()
>>> c2t.inputs.in_file = 'data.Bfloat'
>>> c2t.inputs.out_file = 'streamlines.trk'
>>> c2t.inputs.min_length = 30
>>> c2t.inputs.data_dims = [128, 104, 64]
>>> c2t.inputs.voxel_dims = [2.0, 2.0, 2.0]
>>> c2t.inputs.voxel_order = 'LAS'
>>> c2t.run()
Inputs:
[Mandatory]
data_dims : (a list of from 3 to 3 items which are an integer)
Three comma-separated integers giving the number of voxels along each dimension of the source scans.
in_file : (an existing file name)
The input .Bfloat (camino) file.
voxel_dims : (a list of from 3 to 3 items which are a float)
Three comma-separated numbers giving the size of each voxel in mm.
voxel_order : (a file name)
Set the order in which various directions were stored. Specify with three letters consisting of one each from the pairs LR, AP, and SI. These stand for Left-Right, Anterior-Posterior, and Superior-Inferior. Whichever is specified in each position will be the direction of increasing order. Read coordinate system from a NIfTI file.
[Optional]
args : (a string)
Additional parameters to the command
environ : (a dictionary with keys which are a value of type 'str' and with values which are a value of type 'str')
Environment variables
ignore_exception : (a boolean)
Print an error message instead of throwing an exception in case the interface fails to run
min_length : (a float)
The minimum length of tracts to output
nifti_file : (an existing file name)
Read coordinate system from a NIfTI file.
out_file : (a file name)
The filename to which to write the .trk (trackvis) file.
Outputs:
trackvis : (an existing file name)
The filename to which to write the .trk (trackvis) file.
Wraps command trackvis_to_camino
Inputs:
[Mandatory]
in_file : (an existing file name)
The input .trk (trackvis) file.
[Optional]
append_file : (an existing file name)
A file to which the append the .Bfloat data.
args : (a string)
Additional parameters to the command
environ : (a dictionary with keys which are a value of type 'str' and with values which are a value of type 'str')
Environment variables
ignore_exception : (a boolean)
Print an error message instead of throwing an exception in case the interface fails to run
out_file : (a file name)
The filename to which to write the .Bfloat (camino).
Outputs:
camino : (an existing file name)
The filename to which to write the .Bfloat (camino).