ProSHADE
0.7.5.4 (MAR 2021)
Protein Shape Detection
ProSHADE_settings Member List
This is the complete list of members for
ProSHADE_settings
, including all inherited members.
addExtraSpace
ProSHADE_settings
addStructure
(std::string structure)
ProSHADE_settings
allDetectedCAxes
ProSHADE_settings
allDetectedDAxes
ProSHADE_settings
allDetectedIAxes
ProSHADE_settings
allDetectedOAxes
ProSHADE_settings
allDetectedTAxes
ProSHADE_settings
axisErrTolerance
ProSHADE_settings
axisErrToleranceDefault
(defined in
ProSHADE_settings
)
ProSHADE_settings
blurFactor
ProSHADE_settings
boundsExtraSpace
ProSHADE_settings
boundsSimilarityThreshold
ProSHADE_settings
changeMapResolution
ProSHADE_settings
changeMapResolutionTriLinear
ProSHADE_settings
computeEnergyLevelsDesc
ProSHADE_settings
computeRotationFuncDesc
ProSHADE_settings
computeTraceSigmaDesc
ProSHADE_settings
correlationKernel
ProSHADE_settings
detectedSymmetry
ProSHADE_settings
determineAllSHValues
(proshade_unsign xDim, proshade_unsign yDim, proshade_unsign zDim, proshade_double xDimAngs, proshade_double yDimAngs, proshade_double zDimAngs)
ProSHADE_settings
determineBandwidth
(proshade_unsign circumference)
ProSHADE_settings
determineBandwidthFromAngle
(proshade_double uncertainty)
ProSHADE_settings
determineIntegrationOrder
(proshade_single maxMapRange)
ProSHADE_settings
determineSphereDistances
(proshade_single maxMapRange)
ProSHADE_settings
enLevMatrixPowerWeight
ProSHADE_settings
firstModelOnly
ProSHADE_settings
forceBounds
ProSHADE_settings
forceP1
ProSHADE_settings
getCommandLineParams
(int argc, char **argv)
ProSHADE_settings
halfMapKernel
ProSHADE_settings
inputFiles
ProSHADE_settings
integOrder
ProSHADE_settings
invertMap
ProSHADE_settings
maskFileName
ProSHADE_settings
maskingThresholdIQRs
ProSHADE_settings
maskMap
ProSHADE_settings
maxBandwidth
ProSHADE_settings
maxSphereDists
ProSHADE_settings
maxSymmetryFold
ProSHADE_settings
minSymPeak
ProSHADE_settings
moveToCOM
ProSHADE_settings
noIQRsFromMedianNaivePeak
ProSHADE_settings
normaliseMap
ProSHADE_settings
outName
ProSHADE_settings
overlayStructureName
ProSHADE_settings
pdbBFactorNewVal
ProSHADE_settings
peakNeighbours
ProSHADE_settings
printSettings
(void)
ProSHADE_settings
progressiveSphereMapping
ProSHADE_settings
ProSHADE_settings
(void)
ProSHADE_settings
ProSHADE_settings
(ProSHADE_Task task)
ProSHADE_settings
reBoxMap
ProSHADE_settings
recommendedSymmetryFold
ProSHADE_settings
recommendedSymmetryType
ProSHADE_settings
removeWaters
ProSHADE_settings
requestedResolution
ProSHADE_settings
requestedSymmetryFold
ProSHADE_settings
requestedSymmetryType
ProSHADE_settings
rotationUncertainty
ProSHADE_settings
rotTrsJSONFile
ProSHADE_settings
saveMask
ProSHADE_settings
setAxisComparisonThreshold
(proshade_double axThres)
ProSHADE_settings
setAxisComparisonThresholdBehaviour
(bool behav)
ProSHADE_settings
setBandwidth
(proshade_unsign band)
ProSHADE_settings
setBicubicInterpolationSearch
(bool bicubPeaks)
ProSHADE_settings
setBoundsSpace
(proshade_single boundsExSp)
ProSHADE_settings
setBoundsThreshold
(proshade_signed boundsThres)
ProSHADE_settings
setCorrelationMasking
(bool corMask)
ProSHADE_settings
setDetectedSymmetry
(proshade_double *sym)
ProSHADE_settings
setEnergyLevelsComputation
(bool enLevDesc)
ProSHADE_settings
setEnLevShellWeight
(proshade_double mPower)
ProSHADE_settings
setExtraSpace
(proshade_single exSpace)
ProSHADE_settings
setGroupingSmoothingFactor
(proshade_double smFact)
ProSHADE_settings
setIntegrationOrder
(proshade_unsign intOrd)
ProSHADE_settings
setMapCentering
(bool com)
ProSHADE_settings
setMapInversion
(bool mInv)
ProSHADE_settings
setMapReboxing
(bool reBx)
ProSHADE_settings
setMapResolutionChange
(bool mrChange)
ProSHADE_settings
setMapResolutionChangeTriLinear
(bool mrChange)
ProSHADE_settings
setMaskBlurFactor
(proshade_single blurFac)
ProSHADE_settings
setMaskFilename
(std::string mskFln)
ProSHADE_settings
setMasking
(bool mask)
ProSHADE_settings
setMaskIQR
(proshade_single noIQRs)
ProSHADE_settings
setMaskSaving
(bool savMsk)
ProSHADE_settings
setMaxSymmetryFold
(proshade_unsign maxFold)
ProSHADE_settings
setMinimumMaskSize
(proshade_single minMS)
ProSHADE_settings
setMinimumPeakForAxis
(proshade_double minSP)
ProSHADE_settings
setMissingPeakThreshold
(proshade_double mpThres)
ProSHADE_settings
setNormalisation
(bool normalise)
ProSHADE_settings
setOutputFilename
(std::string oFileName)
ProSHADE_settings
setOverlayJsonFile
(std::string filename)
ProSHADE_settings
setOverlaySaveFile
(std::string filename)
ProSHADE_settings
setPDBBFactor
(proshade_double newBF)
ProSHADE_settings
setPeakNaiveNoIQR
(proshade_double noIQRs)
ProSHADE_settings
setPeakNeighboursNumber
(proshade_unsign pkS)
ProSHADE_settings
setPhaseUsage
(bool phaseUsage)
ProSHADE_settings
setProgressiveSphereMapping
(bool progSphMap)
ProSHADE_settings
setRecommendedFold
(proshade_unsign val)
ProSHADE_settings
setRecommendedSymmetry
(std::string val)
ProSHADE_settings
setRequestedFold
(proshade_unsign val)
ProSHADE_settings
setRequestedSymmetry
(std::string val)
ProSHADE_settings
setResolution
(proshade_single resolution)
ProSHADE_settings
setRotationFunctionComputation
(bool rotfVal)
ProSHADE_settings
setSameBoundaries
(bool sameB)
ProSHADE_settings
setSphereDistances
(proshade_single sphDist)
ProSHADE_settings
setSymmetryRotFunPeaks
(bool rotFunPeaks)
ProSHADE_settings
setTaylorSeriesCap
(proshade_unsign tayCap)
ProSHADE_settings
setTraceSigmaComputation
(bool trSigVal)
ProSHADE_settings
setTypicalNoiseSize
(proshade_single typNoi)
ProSHADE_settings
setVariablesLeftOnAuto
(void)
ProSHADE_settings
setVerbosity
(proshade_signed verbosity)
ProSHADE_settings
smoothingFactor
ProSHADE_settings
symMissPeakThres
ProSHADE_settings
task
ProSHADE_settings
taylorSeriesCap
ProSHADE_settings
useBiCubicInterpolationOnPeaks
ProSHADE_settings
useCorrelationMasking
ProSHADE_settings
usePeakSearchInRotationFunctionSpace
ProSHADE_settings
usePhase
ProSHADE_settings
useSameBounds
ProSHADE_settings
verbose
ProSHADE_settings
~ProSHADE_settings
(void)
ProSHADE_settings
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