LICENSE
MANIFEST.in
README.rst
_custom_build.py
pyproject.toml
setup.py
pywfa/WFA_wrap.pxd
pywfa/__init__.py
pywfa/align.c
pywfa/align.pxd
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pywfa.egg-info/dependency_links.txt
pywfa.egg-info/top_level.txt
pywfa/WFA2_lib/.gitignore
pywfa/WFA2_lib/CMakeLists.txt
pywfa/WFA2_lib/LICENSE
pywfa/WFA2_lib/Makefile
pywfa/WFA2_lib/README.md
pywfa/WFA2_lib/VERSION.txt
pywfa/WFA2_lib/guix.scm
pywfa/WFA2_lib/libwfa2.pc.in
pywfa/WFA2_lib/alignment/Makefile
pywfa/WFA2_lib/alignment/affine2p_penalties.c
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pywfa/WFA2_lib/alignment/cigar_utils.h
pywfa/WFA2_lib/alignment/linear_penalties.h
pywfa/WFA2_lib/alignment/score_matrix.c
pywfa/WFA2_lib/alignment/score_matrix.h
pywfa/WFA2_lib/system/Makefile
pywfa/WFA2_lib/system/mm_allocator.c
pywfa/WFA2_lib/system/mm_allocator.h
pywfa/WFA2_lib/system/mm_stack.c
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pywfa/WFA2_lib/utils/dna_text.h
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pywfa/WFA2_lib/utils/sequence_buffer.c
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pywfa/WFA2_lib/utils/vector.c
pywfa/WFA2_lib/utils/vector.h
pywfa/WFA2_lib/wavefront/Makefile
pywfa/WFA2_lib/wavefront/wavefront.c
pywfa/WFA2_lib/wavefront/wavefront.h
pywfa/WFA2_lib/wavefront/wavefront_align.c
pywfa/WFA2_lib/wavefront/wavefront_align.h
pywfa/WFA2_lib/wavefront/wavefront_aligner.c
pywfa/WFA2_lib/wavefront/wavefront_aligner.h
pywfa/WFA2_lib/wavefront/wavefront_attributes.c
pywfa/WFA2_lib/wavefront/wavefront_attributes.h
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pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h
pywfa/WFA2_lib/wavefront/wavefront_bialign.c
pywfa/WFA2_lib/wavefront/wavefront_bialign.h
pywfa/WFA2_lib/wavefront/wavefront_bialigner.c
pywfa/WFA2_lib/wavefront/wavefront_bialigner.h
pywfa/WFA2_lib/wavefront/wavefront_components.c
pywfa/WFA2_lib/wavefront/wavefront_components.h
pywfa/WFA2_lib/wavefront/wavefront_compute.c
pywfa/WFA2_lib/wavefront/wavefront_compute.h
pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c
pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h
pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c
pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h
pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c
pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h
pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c
pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h
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pywfa/WFA2_lib/wavefront/wavefront_debug.h
pywfa/WFA2_lib/wavefront/wavefront_display.c
pywfa/WFA2_lib/wavefront/wavefront_display.h
pywfa/WFA2_lib/wavefront/wavefront_extend.c
pywfa/WFA2_lib/wavefront/wavefront_extend.h
pywfa/WFA2_lib/wavefront/wavefront_extend_kernels.c
pywfa/WFA2_lib/wavefront/wavefront_extend_kernels.h
pywfa/WFA2_lib/wavefront/wavefront_extend_kernels_avx.c
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pywfa/WFA2_lib/wavefront/wavefront_heuristic.c
pywfa/WFA2_lib/wavefront/wavefront_heuristic.h
pywfa/WFA2_lib/wavefront/wavefront_offset.h
pywfa/WFA2_lib/wavefront/wavefront_pcigar.c
pywfa/WFA2_lib/wavefront/wavefront_pcigar.h
pywfa/WFA2_lib/wavefront/wavefront_penalties.c
pywfa/WFA2_lib/wavefront/wavefront_penalties.h
pywfa/WFA2_lib/wavefront/wavefront_plot.c
pywfa/WFA2_lib/wavefront/wavefront_plot.h
pywfa/WFA2_lib/wavefront/wavefront_sequences.c
pywfa/WFA2_lib/wavefront/wavefront_sequences.h
pywfa/WFA2_lib/wavefront/wavefront_slab.c
pywfa/WFA2_lib/wavefront/wavefront_slab.h
pywfa/WFA2_lib/wavefront/wavefront_termination.c
pywfa/WFA2_lib/wavefront/wavefront_termination.h
pywfa/WFA2_lib/wavefront/wavefront_unialign.c
pywfa/WFA2_lib/wavefront/wavefront_unialign.h
pywfa/WFA2_lib/wavefront/wfa.h
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pywfa/tests/__init__.py
pywfa/tests/long.fa
pywfa/tests/long.reference.fa
pywfa/tests/short.fa
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pywfa/tests/test.py