LICENSE
README.md
pyproject.toml
src/jsrc/__init__.py
src/jsrc/_bio.py
src/jsrc/cli.py
src/jsrc/core.py
src/jsrc/io.py
src/jsrc.egg-info/PKG-INFO
src/jsrc.egg-info/SOURCES.txt
src/jsrc.egg-info/dependency_links.txt
src/jsrc.egg-info/entry_points.txt
src/jsrc.egg-info/requires.txt
src/jsrc.egg-info/top_level.txt
src/jsrc/analyze/__init__.py
src/jsrc/analyze/core.py
src/jsrc/analyze/motif.py
src/jsrc/analyze/msa_consensus.py
src/jsrc/analyze/phylo.py
src/jsrc/analyze/qc.py
src/jsrc/analyze/snpindel.py
src/jsrc/genome/__init__.py
src/jsrc/genome/ani.py
src/jsrc/genome/codon.py
src/jsrc/genome/core.py
src/jsrc/genome/cpg.py
src/jsrc/genome/density.py
src/jsrc/genome/distance.py
src/jsrc/genome/island.py
src/jsrc/genome/kaks.py
src/jsrc/genome/motif_scan.py
src/jsrc/genome/orf.py
src/jsrc/genome/palindrome.py
src/jsrc/genome/promoter.py
src/jsrc/genome/repeat.py
src/jsrc/genome/stats.py
src/jsrc/genome/window.py
src/jsrc/grn/__init__.py
src/jsrc/grn/anno2json.py
src/jsrc/grn/build.py
src/jsrc/grn/centrality.py
src/jsrc/grn/core.py
src/jsrc/grn/net2json.py
src/jsrc/grn/serve.py
src/jsrc/grn/sources/index.html
src/jsrc/grn/sources/script.js
src/jsrc/grn/sources/style.css
src/jsrc/plot/__init__.py
src/jsrc/plot/chromosome.py
src/jsrc/plot/circoslite.py
src/jsrc/plot/cis.py
src/jsrc/plot/core.py
src/jsrc/plot/domain.py
src/jsrc/plot/dotplot.py
src/jsrc/plot/gene.py
src/jsrc/seq/__init__.py
src/jsrc/seq/align.py
src/jsrc/seq/complexity.py
src/jsrc/seq/convert.py
src/jsrc/seq/digest.py
src/jsrc/seq/extract.py
src/jsrc/seq/fetch.py
src/jsrc/seq/kmer.py
src/jsrc/seq/primer.py
src/jsrc/seq/protparam.py
src/jsrc/seq/random.py
src/jsrc/seq/rename.py
src/jsrc/seq/translate.py
tests/test_analyze_extra.py
tests/test_analyze_phylo.py
tests/test_cli_error_behavior.py
tests/test_cli_module_flows.py
tests/test_genome_ani.py
tests/test_genome_codon_kmer.py
tests/test_genome_cpg.py
tests/test_genome_density.py
tests/test_genome_distance.py
tests/test_genome_island.py
tests/test_genome_kaks.py
tests/test_genome_motif_scan.py
tests/test_genome_orf.py
tests/test_genome_palindrome.py
tests/test_genome_promoter.py
tests/test_genome_repeat.py
tests/test_genome_stats.py
tests/test_genome_window.py
tests/test_grn_build_serve.py
tests/test_grn_conversion.py
tests/test_io.py
tests/test_plot_commands.py
tests/test_plot_core.py
tests/test_progress.py
tests/test_seq_align.py
tests/test_seq_complexity.py
tests/test_seq_convert.py
tests/test_seq_core.py
tests/test_seq_digest.py
tests/test_seq_extract.py
tests/test_seq_fetch.py
tests/test_seq_primer.py
tests/test_seq_promoter.py
tests/test_seq_protparam.py
tests/test_seq_random.py
tests/test_seq_rename.py
tests/test_seq_translate.py