dandelion.tools.transfer¶
-
dandelion.tools.
transfer
(self, dandelion, expanded_only=False, neighbors_key=None, rna_key=None, bcr_key=None, overwrite=None)[source]¶ Transfer data in Dandelion slots to AnnData object, updating the .obs, .uns, .obsm and `.obsp`slots.
- Parameters
self (AnnData) – AnnData object.
dandelion (Dandelion) – Dandelion object.
expanded_only (bool) – Whether or not to transfer the embedding with all cells with BCR (False) or only for expanded clones (True).
neighbors_key (str, optional) – key for ‘neighbors’ slot in .uns.
rna_key (str, optional) – prefix for stashed RNA connectivities and distances.
bcr_key (str, optional) – prefix for stashed BCR connectivities and distances.
overwrite (str, bool, list, optional) – Whether or not to overwrite existing anndata columns. Specifying a string indicating column name or list of column names will overwrite that specific column(s).
- Returns
- Return type
AnnData object with updated .obs, .obsm and ‘.obsp’ slots with data from Dandelion object.