dandelion.preprocessing.external.makedb_igblast¶
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dandelion.preprocessing.external.
makedb_igblast
(fasta, igblast_output=None, germline=None, org='human', extended=True, verbose=False)[source]¶ Parses IgBLAST output to airr format.
- Parameters
fasta (PathLike) – fasta file use for reannotation.
igblast_output (PathLike, optional) – igblast output file.
germline (PathLike, optional) – path to germline database.
org (str) – organism of germline sequences.
extended (bool) – whether or not to parse extended 10x annotations. Default is True.
verbose (bool) – whether or not to print the command used in terminal. Default is False.