dandelion.preprocessing.external.assigngenes_igblast

dandelion.preprocessing.external.assigngenes_igblast(fasta, igblast_db=None, org='human', loci='ig', verbose=False)[source]

Reannotate with IgBLASTn.

Parameters
  • fasta (PathLike) – fasta file for reannotation.

  • igblast_db (PathLike, optional) – path to igblast database.

  • org (str) – organism for germline sequences.

  • loci (str) – ig or tr mode for running igblastn.

  • verbose (bool) – whether or not to print the command used in terminal. Default is False.