dandelion.Dandelion.update_germline¶
-
Dandelion.
update_germline
(corrected=None, germline=None, org='human')[source]¶ Update germline reference with corrected sequences and store in Dandelion object.
- Parameters
self (Dandelion) – Dandelion object.
corrected (dict, str, optional) – dictionary of corrected germline sequences or file path to corrected germline sequences fasta file.
germline (str, optional) – path to germline database folder. Defaults to $GERMLINE environmental variable.
org (str) – organism of reference folder. Default is ‘human’.
- Returns
- Return type
updated germline reference diciontary in .germline slot.