dandelion.preprocessing.external.makedb_igblast

dandelion.preprocessing.external.makedb_igblast(fasta, igblast_output=None, germline=None, org='human', extended=True, verbose=False)[source]

Parses IgBLAST output to airr format.

Parameters
  • fasta (PathLike) – fasta file use for reannotation.

  • igblast_output (PathLike, optional) – igblast output file.

  • germline (PathLike, optional) – path to germline database.

  • org (str) – organism of germline sequences.

  • extended (bool) – whether or not to parse extended 10x annotations. Default is True.

  • verbose (bool) – whether or not to print the command used in terminal. Default is False.