dandelion.utilities.from_scirpy¶
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dandelion.utilities.
from_scirpy
(adata, clone_key=None, key_added=None, mapping_mode='chain')[source]¶ Reads a scirpy initialized AnnData oject and returns a Dandelion object.
- Parameters
adata (AnnData) – scirpy initialized AnnData object.
clone_key (str, optional) – column name for clone_id in AnnData. None defaults to clonotype in scirpy initialized object.
key_added (str, optional) – column name for clone_id in Dandelion. None defaults to clone_id in dandelion initialized object.
mapping_mode (str) – mode for retrieving the clone_id calls, either based on cells (all chains/contigs have the same call) or chains (allow for different calls between chains).
- Returns
- Return type
Dandelion object.