dandelion.tools.clone_overlap¶
-
dandelion.tools.
clone_overlap
(self, groupby, colorby, min_clone_size=None, clone_key=None)[source]¶ A function to tabulate clonal overlap for input as a circos-style plot.
- Parameters
self (Dandelion, AnnData) – Dandelion or AnnData object.
groupby (str) – column name in obs/metadata for collapsing to nodes in circos plot.
colorby (str) – column name in obs/metadata for grouping and color of nodes in circos plot.
min_clone_size (int, optional) – minimum size of clone for plotting connections. Defaults to 2 if left as None.
clone_key (str, optional) – column name for clones. None defaults to ‘clone_id’.
- Returns
- Return type
a pandas DataFrame.