dandelion.plotting.clone_network

dandelion.plotting.clone_network(adata, basis='bcr', edges=True, **kwargs)[source]

Using scanpy’s plotting module to plot the network. Only thing that is changed is the dfault options: basis = ‘bcr’ and edges = True.

Parameters
  • adata (AnnData) – AnnData object.

  • basis (str) – key for embedding. Default is ‘bcr’.

  • edges (bool) – whether or not to plot edges. Default is True.

  • **kwargs – passed sc.pl.embedding.

Return type

Union[Figure, Axes, None]