dandelion.preprocessing.external.assigngenes_igblast¶
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dandelion.preprocessing.external.
assigngenes_igblast
(fasta, igblast_db=None, org='human', loci='ig', verbose=False)[source]¶ Reannotate with IgBLASTn.
- Parameters
fasta (PathLike) – fasta file for reannotation.
igblast_db (PathLike, optional) – path to igblast database.
org (str) – organism for germline sequences.
loci (str) – ig or tr mode for running igblastn.
verbose (bool) – whether or not to print the command used in terminal. Default is False.