# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
*.egg
*.egg-info/
dist/
build/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.manifest
*.spec

#optuna data
*.db

# Virtual Environment
venv/
ENV/
env/
.venv
.ENV
.env
virtualenv/

# IDE
.vscode/
.idea/
*.swp
*.swo
*~
.DS_Store
*.sublime-project
*.sublime-workspace
.spyderproject
.spyproject

# Jupyter Notebook
.ipynb_checkpoints
*.ipynb

# Testing
.pytest_cache/
.coverage
htmlcov/
.tox/
.nox/

# Large data directories (add your specific data folders)
sqhAX3_SqhGFP-EcadTom/
3d_data/
data/
datasets/
tracking_results/

# Temporary files
*.tmp
*.log
*.bak
*.swp
temp/
tmp/
.cache/

# OS files
Thumbs.db
Desktop.ini
.Spotlight-V100
.Trashes

# Output files
outputs/
results/
*.csv

# Example data (too large for git)
*.czi

docs/_build/

*.lcov
