MDAnalysis>=2.4.0
networkx>=2.8
numpy>=1.23
scipy>=1.11
matplotlib>=3.6
seaborn>=0.12
pandas>=1.5
scikit-learn>=1.1
tqdm>=4.62

[all]
deeptime>=0.4.4
python-igraph>=0.10.0
leidenalg>=0.9.0
plotly>=5.0.0
ipywidgets>=7.6.0
joblib>=1.1.0

[dev]
pytest>=7.0.0
pytest-cov>=4.0.0
black>=23.0.0
ruff>=0.1.0
mypy>=1.0.0
statsmodels>=0.14
build>=1.0.0
twine>=4.0.0

[docs]
sphinx>=5.0.0
sphinx-rtd-theme>=1.2.0
myst-parser>=1.0.0

[leiden]
python-igraph>=0.10.0
leidenalg>=0.9.0

[ml]
joblib>=1.1.0

[msm]
deeptime>=0.4.4

[viz]
plotly>=5.0.0
ipywidgets>=7.6.0
