Vaccine Design Report

PATIENT INFO

{% for key, val in (patient_summary | default(patient_info)).items() %} {% endfor %}

{{ key }}

{{ val }}

{% include "templates/prediction_models.html" %} {% if candidate_details | default(true) and variants %}

Candidate window details

Targetable residues are highlighted; a vertical bar marks a deletion junction. These are candidate windows. Emitted products lists the exact manufactured sequences.

Each epitope is paired with its recorded WT comparator when available. Underlined WT residues differ at the same sequence position. WT does not establish an observed patient-normal sequence.

{% for v in variants %}

1. {{ v.variant_data.get("Gene name", v.short_description) | e }} · {{ v.short_description | e }}

   {% for key, val in v.variant_data.items() %} {% endfor %}

   {{ v.entity_label | default('Variant') }}	{{ v.short_description }}
   {{ key }}	{{ val }}

   
   

   {{ v.effect_label | default('Predicted Effect') }}

   {% for key, val in v.effect_data.items() %} {% endfor %}

   {{ key }}

   {{ val }}

   
   {% if v.databases %}

   Databases

   {% for key, val in v.databases.items() %} {% endfor %}

   {{ key }}

   {{ val }}

   
   {% endif %}

   {% for p in v.peptides %}

   1. {{ p.header_display_data.sequence_html }}

      {% for key, val in p.peptide_data.items() %}{% endfor %}

      {{ key }}

      {{ val }}

      {% if include_manufacturability %}

      Candidate-window manufacturability

      {% for key, val in p.manufacturability_data.items() %}{% endfor %}

      {{ key }}

      {{ val }}

      {% endif %}

      Predicted target epitopes

      {% include "templates/target_epitopes.html" %} {% if include_wt_epitopes %}

      Predicted self epitopes

      {% set epitope_rows = p.wt_epitopes %} {% include "templates/epitope_table.html" %} {% endif %}
   {% endfor %}
{% endfor %}

{% endif %} {% if ranked_candidates is defined %}{% include "templates/ranking.html" %}{% endif %}

{% include "templates/products.html" %}

{% include "templates/score_guide.html" %}

Run details

{% for key, val in patient_info.items() %}{% endfor %}

{{ key | e }}	{{ val | e }}

{% if prediction_configuration %}

Effective prediction configuration

{% for stage in prediction_configuration %}

{{ stage.stage }}: {{ stage.status }}

{% for detail in stage.details %}
• {{ detail }}
{% endfor %}

{% endfor %} {% endif %}

COMMAND LINE ARGUMENTS

{% for key, val in args %} {% endfor %}

{{ key }}

{{ val }}

{% if input_json_file %}

Report generated from saved location: {{ input_json_file }}

{% endif %}

{% if reviewers %} {% for r in reviewers %} {% endfor %}

Reviewed By
{{ r }}

{% endif %}

Final Review
Name {{ final_review }} Signature Date