Third-party annotation data — Peters et al. EPICv2 manifest (derived subset)
==============================================================================

File
----
src/epicv2io/resources/peters_epicv2_manifest.parquet

This file is NOT original EpicV2IO content. It is a derived column subset of
the extended Illumina MethylationEPIC v2.0 probe manifest published by
Peters et al. (2024).

Upstream sources
----------------
1. Peters TJ, Meyer B, Ryan L, Achinger-Kawecka J, Song J, Campbell EM,
   Qu W, Nair S, Loi-Luu P, Stricker P, Lim E, Stirzaker C, Clark SJ,
   Pidsley R (2024). Characterisation and reproducibility of the
   HumanMethylationEPIC v2.0 BeadChip for DNA methylation profiling.
   BMC Genomics 25:251. https://doi.org/10.1186/s12864-024-10027-5

2. Article supplementary material: Additional file 4 (CSV).
   https://link.springer.com/article/10.1186/s12864-024-10027-5

3. Bioconductor annotation package EPICv2manifest / AnnotationHub AH116484
   (Artistic License 2.0). Rebuild script:
   scripts/build_peters_manifest_parquet.R

Licence of the article / open materials
---------------------------------------
The BMC Genomics article is licensed under Creative Commons Attribution 4.0
International (CC BY 4.0):
https://creativecommons.org/licenses/by/4.0/

EpicV2IO distributes a reduced Parquet representation (selected columns only)
to shrink install size and speed loading. That is an adaptation under CC BY 4.0;
attribution is required.

Columns retained
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IlmnID, CHR, MismatchPos, MissingPos, CH_BLAT, CH_WGBS_evidence

The EpicV2IO software licence (see LICENSE) does not replace the attribution
obligations for this third-party annotation resource.
