anndata>=0.12.0
click
cycler
dask>=2025.2.0
geopandas
loguru
matplotlib
napari>=0.6.2
napari-matplotlib>=3.0.2
numba
numpy
packaging
pandas
pillow
pyqtgraph
qtpy
scanpy
scipy
shapely
scikit-learn
spatialdata>=0.7.2
superqt
typing_extensions>=4.8.0
vispy
xarray
xarray-datatree

[all]
napari[pyqt5]

[bermuda]
bermuda

[docs]
sphinx>=4.5
sphinx-book-theme>=1.0.0
myst-parser>=2.0.0
sphinxcontrib-bibtex>=2.5.0
sphinx-autodoc-typehints>=1.11.0
sphinx-autobuild
scanpydoc
ipykernel
ipython
sphinx-copybutton
sphinx-qt-documentation
myst-nb>=1.0.0
squidpy

[pre]
spatialdata>=0.7.3a1

[readthedocs]
pydantic>2

[test]
loguru
pytest
pytest-cov
pytest-mock
pytest-qt
pre-commit>=2.9.0
