.gitignore
.gitlab-ci.yml
LICENSE
MANIFEST.in
README.rst
pyproject.toml
GraDiv.egg-info/PKG-INFO
GraDiv.egg-info/SOURCES.txt
GraDiv.egg-info/dependency_links.txt
GraDiv.egg-info/entry_points.txt
GraDiv.egg-info/requires.txt
GraDiv.egg-info/top_level.txt
gradiv/__init__.py
gradiv/_version.py
gradiv/algo.py
gradiv/functions.py
gradiv/main.py
gradiv/pggraph.py
gradiv/polymorphism.py
gradiv/tests.py
test_data/test_graph.gfa
test_data/figures/indels.png
test_data/figures/inv.png
test_data/figures/seminested.png
test_data/figures/snps.png
test_data/test_graph_GraTools_INDEX/header_test_graph.txt
test_data/test_graph_GraTools_INDEX/links_test_graph.db
test_data/test_graph_GraTools_INDEX/samples_chrom.txt
test_data/test_graph_GraTools_INDEX/bam_files/test_graph.bam
test_data/test_graph_GraTools_INDEX/bam_files/test_graph.bam.bai
test_data/test_graph_GraTools_INDEX/bed_files/genome1.bed
test_data/test_graph_GraTools_INDEX/bed_files/genome2.bed
test_data/test_graph_GraTools_INDEX/bed_files/genome3.bed
test_data/test_graph_GraTools_INDEX/bed_files/genome4.bed
test_data/test_graph_gradiv/test_graph_id_table.csv
test_data/test_graph_gradiv/test_graph_seq_table.csv