LICENSE
README.md
pyproject.toml
ontos/__init__.py
ontos/__main__.py
ontos/cli.py
ontos.egg-info/PKG-INFO
ontos.egg-info/SOURCES.txt
ontos.egg-info/dependency_links.txt
ontos.egg-info/entry_points.txt
ontos.egg-info/requires.txt
ontos.egg-info/top_level.txt
ontos/_hooks/__init__.py
ontos/_hooks/pre-commit
ontos/_hooks/pre-push
ontos/_templates/__init__.py
ontos/_templates/common_concepts_template.md
ontos/_templates/decision_history_template.md
ontos/_templates/templates.py
ontos/commands/__init__.py
ontos/commands/agents.py
ontos/commands/claude_template.py
ontos/commands/consolidate.py
ontos/commands/doctor.py
ontos/commands/env.py
ontos/commands/export.py
ontos/commands/export_claude.py
ontos/commands/export_data.py
ontos/commands/hook.py
ontos/commands/init.py
ontos/commands/instruction_protocol.py
ontos/commands/link_check.py
ontos/commands/log.py
ontos/commands/maintain.py
ontos/commands/map.py
ontos/commands/migrate.py
ontos/commands/migrate_cmd.py
ontos/commands/migration_report.py
ontos/commands/promote.py
ontos/commands/query.py
ontos/commands/rename.py
ontos/commands/scaffold.py
ontos/commands/stub.py
ontos/commands/verify.py
ontos/core/__init__.py
ontos/core/body_refs.py
ontos/core/cache.py
ontos/core/claude_template.py
ontos/core/config.py
ontos/core/content_hash.py
ontos/core/context.py
ontos/core/curation.py
ontos/core/errors.py
ontos/core/frontmatter.py
ontos/core/git.py
ontos/core/graph.py
ontos/core/history.py
ontos/core/instruction_artifacts.py
ontos/core/instruction_protocol.py
ontos/core/link_diagnostics.py
ontos/core/migration.py
ontos/core/ontology.py
ontos/core/paths.py
ontos/core/proposals.py
ontos/core/schema.py
ontos/core/snapshot.py
ontos/core/staleness.py
ontos/core/suggestions.py
ontos/core/tokens.py
ontos/core/types.py
ontos/core/validation.py
ontos/io/__init__.py
ontos/io/config.py
ontos/io/files.py
ontos/io/git.py
ontos/io/obsidian.py
ontos/io/scan_scope.py
ontos/io/snapshot.py
ontos/io/toml.py
ontos/io/yaml.py
ontos/mcp/__init__.py
ontos/mcp/_types.py
ontos/mcp/_validation.py
ontos/mcp/bundler.py
ontos/mcp/cache.py
ontos/mcp/locking.py
ontos/mcp/portfolio.py
ontos/mcp/portfolio_config.py
ontos/mcp/rename_tool.py
ontos/mcp/scanner.py
ontos/mcp/schemas.py
ontos/mcp/server.py
ontos/mcp/tools.py
ontos/mcp/writes.py
ontos/ui/__init__.py
ontos/ui/json_output.py
ontos/ui/output.py
tests/test_cli.py
tests/test_cli_cwd_fix.py
tests/test_cli_phase4.py
tests/test_config.py
tests/test_consolidate.py
tests/test_context_contention.py
tests/test_cycle_detection.py
tests/test_describes.py
tests/test_document_loading_contract_a1.py
tests/test_dual_mode.py
tests/test_end_session.py
tests/test_env_cli.py
tests/test_frontmatter_parsing.py
tests/test_frontmatter_tags.py
tests/test_immutable_history.py
tests/test_lib.py
tests/test_lint.py
tests/test_maintain.py
tests/test_map_compact.py
tests/test_map_filter.py
tests/test_orphan_detection.py
tests/test_pre_commit_check.py
tests/test_pre_push_check.py
tests/test_query.py
tests/test_session_context.py
tests/test_suggestions.py
tests/test_v284_refactor.py
tests/test_validation.py
tests/test_validation_concepts_a1.py
tests/test_yaml_edge_cases.py