Emitted products

{% if product_groups %}

Exact products written by this run. Antigen positions are zero-based, end-exclusive amino-acid positions in the peptide or encoded protein.

{% for group in product_groups %}

{{ group.modality }}

Constructs: {{ group.counts.constructs }} ({{ group.counts.unique_construct_sequences }} unique sequences). Antigen slots: {{ group.counts.antigen_slots }}. Unique antigen sequences: {{ group.counts.unique_antigen_sequences if group.counts.unique_antigen_sequences is not none else 'unavailable in this historical design' }}.

{% if group.counts.source_candidates %}

Recorded source events: {{ group.counts.source_events }}. Candidate mappings without a recorded event: {{ group.counts.source_candidates_without_event }}. Related alternative sequences do not establish independent target coverage.

{% endif %} {% if group.files %}

Product files (relative to the run output directory): {% for file in group.files %}{{ file }}{% if not loop.last %}; {% endif %}{% endfor %}.

{% endif %} {% for product in group.products %}

{{ product.display_name | e }} · {{ product.length }} {{ product.unit }}

Product ID: {{ product.name | e }}

{% if product.unit == 'aa' %}

N-terminal acetylation: {{ 'yes' if product.n_terminal_acetylation else 'no' }}; C-terminal amidation: {{ 'yes' if product.c_terminal_amidation else 'no' }}.

{% endif %}

{{ 'Full nucleotide sequence, including polyA' if product.unit == 'nt' else 'Manufactured amino-acid sequence' }}:

{% if product.sequence_html %}
{{ product.sequence_html }}
{% else %}
{{ product.sequence | wordwrap(70, break_long_words=True) }}
{% endif %} {% if product.protein %}

Encoded protein:

{{ product.protein_html }}
{% endif %} {% if product.antigens %} {% for antigen in product.antigens %} {% endfor %}
Antigen / source genesExact antigen sequencePosition [start, end)Source mappings
{{ antigen.name }}{% if antigen.genes %}
{{ antigen.genes }}{% endif %}		 {{ antigen.sequence_html }}{% if not antigen.target_coordinates_known %}
Target coordinates unavailable or differ across sources.{% endif %}		[{{ antigen.start }}, {{ antigen.end }})
{{ antigen.length }} aa		 {{ antigen.sources if antigen.sources is not none else "unavailable" }} candidate mapping{{ "" if antigen.sources == 1 else "s" }}; {{ antigen.transcripts if antigen.transcripts is not none else "unavailable" }} transcript{{ "" if antigen.transcripts == 1 else "s" }}

Recorded source identifiers and evidence mappings are available in the manifest and native dataset.

{% else %}

Historical product: antigen placement/source mappings were not recorded. Labels: {{ product.antigen_names | join(', ') }}.

{% endif %} {% if include_manufacturability and product.manufacturability %}
Manufacturability metrics
{% for key, value in product.manufacturability.items() %} {% endfor %}
{{ key | replace('_', ' ') }}{{ value }}
{% endif %}
{% else %}

No {{ group.modality }} products were emitted.

{% endfor %}
{% endfor %} {% else %}

No construct files were emitted. Use --output-dir to request product assembly. Candidate windows are analysis results.

{% endif %}