 }})
Plot dataset particles by model outputs such as z-latent-space dimensions or analysis covariates such as UMAP embeddings.
Use lasso selection to write --ind .pkl files,
and optionally view dataset images or volume reconstructions for each particle.
 }})
Grid of scatters across latent dimensions and embeddings (PCA / UMAP on the diagonal when available).
{% endif %} {% if latent3d_active %} }})
Interactive 3D scatter of three latent axes, with optional color from analysis columns when you have at least three z dimensions.
 }})
Compose a cryodrgn command you can copy and paste for tools such as abinit and train_vae — required args plus only the options you fill in.
 }})
Draw a line through the latent scatter to generate volumes along a trajectory — direct interpolation or nearest-neighbor mode — with ChimeraX previews.
{% endif %} {# Inactive interfaces start on next row #} {% if any_inactive %} {% endif %} {% if not explorer_active %}
Plot dataset particles by model outputs such as z-latent-space dimensions or analysis covariates such as UMAP embeddings.
Use lasso selection to write --ind .pkl files.
{% if command_builder_only %}
Activate this interface by running cryodrgn dashboard <outdir>.
Activate this interface by loading an output directory with single-particle image previews.
{% endif %}
Grid of scatters across latent dimensions and embeddings (PCA / UMAP on the diagonal when available).
Activate this interface by running cryodrgn dashboard <outdir>.
Interactive 3D scatter of three latent axes, with optional color from analysis columns when you have at least three z dimensions.
Activate this interface by running cryodrgn dashboard <outdir>.
Activate this interface by loading a run with at least three latent dimensions (current: {{ zdim }}).
{% endif %}
Draw a line through the latent scatter to generate volumes along a trajectory — direct interpolation or nearest-neighbor mode — with ChimeraX previews.
{% if command_builder_only %}Activate this interface by running cryodrgn dashboard <outdir>.
Activate this interface by using a CUDA-enabled machine and loading a run with model weights for the selected epoch.
{% endif %}