{% extends "layout.html" %} {% from "overview/institute_sidebar.html" import institute_actionbar %} {% from "clinvar/clinvar_howto.html" import clinvar_howto_modal %} {% block title %} {{ super() }} - {{ institute.display_name }} {% endblock %} {% block top_nav %} {{ super() }}
No ClinVar submissions found. You can create one by choosing one or more pinned variants on a case page and clicking the button "Submit to ClinVar".
{% endif %}Name | Type | Case | Refseq | Gene | HGVS | Significance | Added by | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
{{loop.index}} | {% if subm_variant.category == 'sv' %} {% do var_key_name.update( {subm_variant.local_id : '_'.join([subm_variant.var_type, subm_variant.chromosome, subm_variant.breakpoint1 or subm_variant.outer_start or ""]) }) %}{{var_key_name[subm_variant.local_id]|truncate(25,true,'..')}} | SV |
{% else %}
{% if subm_variant.ref_seq and subm_variant.hgvs %}
{% do var_key_name.update( {subm_variant.local_id : '_'.join([subm_variant.ref_seq, subm_variant.hgvs])} ) %}
{% else %}
{% do var_key_name.update({subm_variant.local_id : '_'.join([subm_variant.chromosome, subm_variant.start, subm_variant.ref[0:5], subm_variant.alt[0:5]]) }) %}
{% endif %}
{{var_key_name[subm_variant.local_id]|truncate(25,true,'..')}} | SNV |
{% endif %}
{{subm_obj.cases[subm_variant.case_id]}} | {{subm_variant.ref_seq or '-'}} | {{subm_variant.gene_symbol or '-'}} | {{subm_variant.hgvs|truncate(25,true,'..') or '-'}} | {{subm_variant.clinsig}} | {{subm_variant.added_by or "N/A"}} | ||
|
This submission is open but has no variants yet.
{% endif %}Individual ID | Case ID | Variant | Allele origin | ||||
---|---|---|---|---|---|---|---|
{{loop.index}} | {{subm_obj.cases[case.case_id]}} | {{var_key_name[case.linking_id]|truncate(25,true,'..')}} | {{case.allele_origin}} | ||||
No case data provided for the above variants
{% endif %}