{% extends "layout.html" %} {% from "utils.html" import comments_table, pedigree_panel %} {% from "variants/components.html" import external_scripts, external_stylesheets, gene_cell, frequency_cell_general %} {% from "variant/buttons.html" import reviewer_button%} {% from "variants/utils.html" import cell_rank, dismiss_variants_block, filter_form_footer, update_stash_filter_button_status, pagination_footer, pagination_hidden_div, str_filters, filter_script_main %} {% block title %} {{ super() }} - {{ institute.display_name }} - {{ case.display_name }} - STR variants {% endblock %} {% block css %} {{ super() }} {{ external_stylesheets() }} {% endblock %} {% block top_nav %} {{ super() }}
Index | Repeat locus | Reference repeat unit | Estimated size | Reference size | Status | Genotype | Chr. | Position |
---|---|---|---|---|---|---|---|---|
{{ cell_rank(variant, institute, case, form, manual_rank_options) }} | {{ str_locus_info(variant) }} | {{ variant.str_display_ru or variant.str_ru }} | {{ variant.alternative|replace("STR", "")|replace("<", "")|replace(">", "") }} | {{ variant.str_ref }} | {{ str_status(variant) }} | {% for sample in variant.samples %}
{% if sample.genotype_call != "./." %}
{{ sample.display_name }}
{{ sample.genotype_call }} {% endif %} {% endfor %} |
{{ variant.chromosome }} | {{ variant.position|human_longint|safe }} {{ reviewer_button(case,variant,case_groups,institute._id) }} {% if case.bam_files %} IGV viewer {% else %} {% endif %} |
No matching variants |