{% import "bootstrap/wtf.html" as wtf %} {% from "utils.html" import comments_table %} {% from "variants/indicators.html" import pin_indicator, causative_badge, clinical_assessments_badge, comments_badge, dismissals_badge, evaluations_badge, group_assessments_badge, matching_manual_rank, research_assessments_badge %} {% macro filter_script_main(cytobands) %} {% endmacro %} {% macro mark_heteroplasmic_mt(individuals, samples) %} {% for ind in individuals if ind.phenotype == 2 %} {% for gt in samples|selectattr("sample_id", "equalto", ind.individual_id) %} {% if gt.alt_frequency and gt.alt_frequency < 0.9 and gt.alt_frequency != -1 %} {{ (100*gt.alt_frequency)|round(1) }}% {% endif %} {% endfor %} {% endfor %} {% endmacro %} {% macro filter_form_footer(form, result_size, total_variants, more_variants, page, nvars, institute) %}
{% endmacro %} {% macro dismiss_variants_block(dismiss_variant_options, institute, case, show_dismiss_block) %}Variant | Combined score | Rank score | Gene annotation | Func. annotation |
---|---|---|---|---|
{% if compound.not_loaded %} {{ compound.display_name }} (not loaded) {% else %} {{ compound.display_name|truncate(20, True) }} {% if 'suspects' in case and compound.variant in case.suspects %} {% endif %} {% endif %} | {{ compound.combined_score }} | {{ compound.rank_score }} |
{% for annotation in compound.region_annotations %}
{{ annotation }} {% endfor %} |
{% for annotation in compound.functional_annotations %}
{{ annotation }} {% endfor %} |
Region | Type | Length | Rank score |
---|---|---|---|
{{ sv.chromosome }}{{ sv.cytoband_start }} | {{ sv.sub_category }} | {{ sv.length if sv.length < 100000000000 else "-" }} | {{ sv.rank_score }} |