{% macro action_bar(institute, case, causatives, collaborators, current_user, report_types, has_rna_tracks) %} {% endmacro %} {% macro default_gene_panel(institute, case) %} {% for panel in case.panels if panel.is_default %}
{{ panel.display_name|truncate(18, True) }} {% if case.outdated_panels and panel.panel_name in case.outdated_panels %} ! {% endif %}
{% endfor %} {% endmacro %} {% macro reports(institute, case, report_types) %} {% endmacro %} {% macro custom_case_report(institute, case, report_data) %} {% set report_key = report_data.key_name %} {% if case.get(report_key) %}
{{report_key|replace("_"," ")|title}}
{% if case.get(report_key) is existing %}
{% if report_data.pdf_export %}
{% endif %} {% else %}
{% endif %}
{% endif %} {% endmacro %} {% macro analysis_date(case) %}
{{ case.analysis_date.date() }}
{% if case.is_migrated %}
migrated
{% endif %} {% endmacro %} {% macro genome_build(case, case_groups, has_rna_tracks) %}
Genome build {{ case.genome_build }}
{% if case.bam_files %}
{% else %} Alignment missing {% endif %}
{% if has_rna_tracks %}
{% endif %} {% endmacro %} {% macro rank_model(case) %}
Rank model v.{{ case.rank_model_version }}
{% if case.sv_rank_model_version %}
SV rank model v.{{ case.sv_rank_model_version }}
{% endif %} {% endmacro %} {% macro status(case) %}
{% endmacro %} {% macro assign(institute, case) %}
{% endmacro %} {% macro research(case) %} {% if case.research_requested %} Research pending {% else %} {% endif %} {% endmacro %} {% macro rerun(institute, case) %} {% if case.rerun_requested %} {% if 'RERUN_MONITOR' in config and config.RERUN_MONITOR == True %} {% endif %} Rerun pending
{% else %} {% endif %} {% endmacro %} {% macro rerun_monitor_interact(institute, case) %}
Activate monitoring
{% endmacro %} {% macro share_case(institute, case, collaborators) %} {% endmacro %} {% macro beacon_share(institute, case, current_user) %} {% if "beacon_submitter" not in current_user.roles %} {% else %} {% endif %}
{% if case.beacon %}Beacon submission {% else %} Share to Beacon {% endif %}
{% endmacro %} {% macro matchmaker_share(institute, case, current_user) %} {% if "mme_submitter" not in current_user.roles %} {% elif "suspects" not in case or case.suspects|length == 0 %} {% else %} {% endif %}
Matchmaker
{% endmacro %} {% macro check_decipher(case, institute) %} {% endmacro %} {% macro research_modal(institute, case) %}
{% endmacro %} {% macro reanalysis_modal(institute, case) %} {% endmacro %} {% macro confirm_inactivate(institute, case) %} {% endmacro %} {% macro solve_modal(institute, case) %} {% endmacro %} {% macro archive_case(institute,case, causatives)%} {% endmacro %} {% macro analysis_report(institute, case, analysis) %} {% if analysis.delivery_report == case.delivery_report and analysis.date.date() == case.analysis_date.date() %} {% else %}
Delivery ({{ analysis.date.date() }})
{% if analysis.delivery_report != case.delivery_report and analysis.delivery_report is existing %}
{% elif analysis.delivery_report == case.delivery_report %}
{% else %}
{% endif %}
{% endif %} {% endmacro %}