{% extends "report_base.html" %} {% block body %}

Scout - Institute {{institute.display_name}} - case {{case.display_name}} - {{panel.name_and_version}}: panel extent report

- created on: {{report_created_at}}

{{ hits_panel() }}
[END OF REPORT]

clinical-genomics.github.io/scout
{% endblock %} {% macro hits_panel() %}
Panel details Case details
Gene panel: {{panel.name_and_version}}
Last updated: {{ panel.date.strftime('%Y-%m-%d') }} {% if case.outdated_panels and panel.panel_name in case.outdated_panels %} ! {% endif %}
Panel ID: {{ panel.panel_name }}
Description: {{ panel.description }}
Number of genes: {{ panel.genes|length }}
Institute: {{ panel.institute }}
Archived: {% if panel.is_archived %}True{% else %}False{% endif %}
Case: {{case.display_name}}
Institute: {{institute.display_name}} - {{institute._id}}
Status: {{case.status}}
Analysis date: {{case.analysis_date}}
Genome build: {{case.genome_build}}

Panel genes
{{ panel_genes|sort|join(", ") }}

{% if case.outdated_panels and panel.panel_name in case.outdated_panels %}
!Outdated panel
Panel version used in the analysis ({{panel.version}}) is outdated.
Genes present in case panel and not in latest version
{{case.outdated_panels[panel.panel_name]['extra_genes']|join(', ') or '-'}}
Genes present only in latest version
{{case.outdated_panels[panel.panel_name]['missing_genes']|join(', ') or '-'}}.

{% endif %} {% if variant_hits.str %}
Panel genes investigated for STRs
{{ variant_hits.str|sort|join(", ") }}

{% endif %} {% if variant_hits.smn and case.smn_tsv %}
SMN Copy Number
{{ variant_hits.smn|sort|join(", ") }}
{% endif %} {% endmacro %}