{% extends "layout.html" %} {% from "variants/components.html" import gene_cell, frequency_cell_general %} {% from "utils.html" import comments_table %} {% from "overview/institute_sidebar.html" import institute_actionbar %} {% from "variants/utils.html" import pagination_footer, pagination_hidden_div %} {% block title %} {{ super() }} - {{ institute.display_name }} - All SNVs and INDELs {% endblock %} {% block css %} {{ super() }} {% endblock %} {% block top_nav %} {{ super() }} {% endblock %} {% macro page_content() %}
Filters
{{ filters_form() }}
{% for variant in variants %} {% if variant.dismiss_variant %} {% else %} {% endif %} {% endfor %} {% if form.hgnc_symbols.data == [] %} {% elif variants == [] %} {% endif %}
Case : Score Gene Pop Freq CADD Region Function HGVS
{{ cell_rank(variant) }} {{ gene_cell(variant) }} {{ frequency_cell_general(variant) }} {{ cell_cadd(variant) }} {% for annotation in variant.region_annotations %}
{{ annotation }}
{% endfor %}
{% for annotation in variant.functional_annotations %}
{{ annotation }}
{% endfor %}
{{ (variant.hgvs or '')|url_decode }}
No variants to display
No variants matching your query in genes: {{form.hgnc_symbols.data|join(", ")}}
{{ pagination_hidden_div(page) }} {{ pagination_footer(more_variants, page) }}
{% endmacro %} {% macro cell_rank(variant) %} {{ variant.case_display_name}} : {{ variant.rank_score|int }} {% endmacro %} {% macro cell_cadd(variant) %}
{% if variant.cadd_score %}{{ variant.cadd_score|round(1) }}{% else %}-{% endif %}
{% endmacro %} {% macro filters_form() %} {{ form.csrf_token }}
{{ form.hgnc_symbols.label(class="control-label") }} {{ form.hgnc_symbols(class="form-control") }}
{{ form.variant_type.label(class="control-label") }} {{ form.variant_type(class="form-control", class="selectpicker", data_style="btn-secondary") }}
{{ form.phenotype_terms.label(class="control-label") }} {{ form.phenotype_terms(class="form-control") }}
{{ form.phenotype_groups.label(class="control-label") }} {{ form.phenotype_groups(class="form-control") }}
{{ form.cohorts.label(class="control-label") }} {{ form.cohorts(class="form-control") }}
{{ form.similar_case.label(class="control-label") }} {{ form.similar_case(class="form-control") }}
{{ form.filter_variants(class_="btn btn-primary form-control") }}
{{ form.filter_export_variants(class_="btn btn-warning form-control") }}
{% if result_size %}
Showing {{variants|length}}/{{result_size}} variants
{% endif %} {% endmacro %} {% block content_main %}
{{ institute_actionbar(institute) }}
{{ page_content() }}
{% endblock %} {% block scripts %} {{ super() }} {% endblock %}