{% extends "layout.html" %} {% from "variants/utils.html" import fusion_filters, cell_rank, pagination_footer, pagination_hidden_div, dismiss_variants_block, filter_form_footer, filter_script_main, update_stash_filter_button_status %} {% from "variants/components.html" import external_scripts, external_stylesheets, fusion_variant_gene_symbols_cell %} {% block title %} {{ super() }} - {{ institute.display_name }} - {{ case.display_name }} - Fusion variants {% endblock %} {% block css %} {{ super() }} {{ external_stylesheets() }} {% endblock %} {% block top_nav %} {{ super() }} {% endblock %} {% block top_nav_right %} {{ super() }} {% endblock %} {% block content_main %}
{{ pagination_hidden_div(page) }}
{{ filter_form_footer(form, result_size, total_variants, more_variants, page, variants|length, institute) }}
{% for variant in variants %} {{ variant_row(variant) }} {% else %} {% endfor %}
Rank (beta) Fusion Genes Callers Observed Score (beta) Junction Reads Split Reads FFPM Frame Status Transcript ID Exon Number Breakpoints Orientation
No matching variants
{{ dismiss_variants_block(dismiss_variant_options, institute, case, show_dismiss_block) }}
{{ pagination_footer(more_variants, page) }}
{% endblock %} {% macro variant_row(variant) %} {% if variant.dismiss_variant %} {% elif 'causatives' in case and variant._id in case.causatives %} {% else %} {% endif %} {{ cell_rank(variant, institute, case, form, manual_rank_options) }} {{ fusion_variant_gene_symbols_cell(variant) }} {{ variant.tool_hits|int }} {{variant.found_db|join(", ") if variant.found_db else "-"}} {{ variant.fusion_score|float|round(3) }} {{ variant.samples[0].read_depth }} {{ variant.samples[0].split_read }} {{ variant.samples[0].ffpm }} {{ variant.frame_status }} {% if variant.genes %} {% for gene in variant.genes %} {% for transcript in gene.transcripts %}
{{ transcript.transcript_id }}
{% endfor %} {% endfor %} {% endif %} {% if variant.genes %} {% for gene in variant.genes %} {% for transcript in gene.transcripts %}
{{ transcript.exon|int }}
{% endfor %} {% endfor %} {% endif %} {{ variant.chromosome }}:{{ variant.position }}
{{ variant.end_chrom }}:{{ variant.end }} {{ variant.orientation }} {% endmacro %} {% block scripts %} {{ super() }} {{ external_scripts() }} {{ filter_script_main(cytobands) }} {% endblock %}