{% extends "layout.html" %} {% from "variants/utils.html" import cancer_sv_filters,cell_rank, pagination_footer, pagination_hidden_div, filter_form_footer, filter_script_main, update_stash_filter_button_status, dismiss_variants_block %} {% from "variants/components.html" import external_scripts, external_stylesheets, frequency_cell_general, observed_cell_general, variant_gene_symbols_cell, variant_funct_anno_cell, variant_region_anno_cell %} {% block title %} {{ super() }} - {{ institute.display_name }} - {{ case.display_name }} - SV variants {% endblock %} {% block css %} {{ super() }} {{ external_stylesheets() }} {% endblock %} {% block top_nav %} {{ super() }} {% endblock %} {% block top_nav_right %} {{ super() }} {% endblock %} {% block content_main %}
{{ pagination_hidden_div(page) }}
{{ filter_form_footer(form, result_size, total_variants, more_variants, page, variants|length, institute) }}
{% for variant in variants %} {{ variant_row(variant) }} {% else %} {% endfor %}
Index Type Chr Start End Length Pop Freq Observed Gene(s) Region Function Tumor Normal
No matching variants
{{ dismiss_variants_block(dismiss_variant_options, institute, case, show_dismiss_block) }}
{{ pagination_footer(more_variants, page) }}
{% endblock %} {% macro variant_row(variant) %} {% if variant.dismiss_variant %} {% elif 'causatives' in case and variant._id in case.causatives %} {% else %} {% endif %} {{ cell_rank(variant, institute, case, form, manual_rank_options) }} {{ variant.sub_category|upper }} {{ variant.chromosome if variant.chromosome == variant.end_chrom else variant.chromosome+'-'+variant.end_chrom }} {{ variant.position|human_longint|safe }} {{ 'inf' if variant.end == 100000000000 else variant.end|human_longint|safe }} {{ '-' if variant.length == 100000000000 else variant.length|human_longint|safe }} {{ frequency_cell_general(variant) }} {{observed_cell_general(variant)}} {{ variant_gene_symbols_cell(variant) }} {{ variant_region_anno_cell(variant) }} {{ variant_funct_anno_cell(variant) }} {{ allele_cell(variant.tumor or {}) }}{% if variant.somatic_score %}[{{ variant.somatic_score }}]{% endif %} {{ allele_cell(variant.normal or {}) }} {% endmacro %} {% macro allele_cell(allele) %} {% if 'alt_freq' in allele %} {% if allele.alt_freq == -1 %} . {% else %} {{ allele.alt_freq|round(4) }} {% endif %}
{% if allele.alt_depth >= 0 %}{{ allele.alt_depth }}{% else %}.{% endif %}|{% if allele.ref_depth >= 0 %}{{ allele.ref_depth }}{% else %}.{% endif %} {% else %} N/A {% endif %} {% endmacro %} {% block scripts %} {{ super() }} {{ external_scripts() }} {{ filter_script_main(cytobands) }} {% endblock %}