setuptools>=80.9.0,<81
spatialdata==0.5.0
spatialdata-io==0.3.0
spatialdata-plot==0.2.11
squidpy==1.6.5
napari-spatialdata==0.5.7

numpy==2.2.6
scanpy==1.10.4
anndata==0.12.0
umap-learn==0.5.7

pandas==2.2.3
scipy==1.13.1
scikit-learn==1.7.2
numba==0.62.1
llvmlite==0.45.1
shapely==2.1.1

matplotlib==3.9.4
seaborn==0.13.2
plotnine==0.15.0
Pillow==11.3.0

cell2location==0.1.5

scvi-tools==1.4.0

zarr==2.18.7
h5py==3.14.0
tifffile==2025.8.28
imageio==2.37.0
ome-zarr==0.11.1

statsmodels==0.14.5
Pint==0.25
pyarrow==21.0.0

click==8.3.0
typer==0.16.0
docopt==0.6.2
PyYAML==6.0.3
geosketch==1.3
cell2location==0.1.5
geopandas==1.1.1
pydeseq2==0.5.2
harmonypy==0.0.10
igraph==0.11.9
louvain==0.8.2
