LICENSE
MANIFEST.in
README.md
packages.txt
pyproject.toml
requirements-extended.txt
requirements.txt
setup.py
spatialsnake/__init__.py
spatialsnake/command_line.py
spatialsnake/config.yaml
spatialsnake.egg-info/PKG-INFO
spatialsnake.egg-info/SOURCES.txt
spatialsnake.egg-info/dependency_links.txt
spatialsnake.egg-info/entry_points.txt
spatialsnake.egg-info/not-zip-safe
spatialsnake.egg-info/requires.txt
spatialsnake.egg-info/top_level.txt
spatialsnake/workflow/Snakefile
spatialsnake/workflow/get_sample.smk
spatialsnake/workflow/envs/advance_analysis.yaml
spatialsnake/workflow/envs/annotation.yaml
spatialsnake/workflow/envs/annotation_help.yaml
spatialsnake/workflow/envs/clustering.yaml
spatialsnake/workflow/envs/compare_stage.yaml
spatialsnake/workflow/envs/integrate.yaml
spatialsnake/workflow/envs/merge.yaml
spatialsnake/workflow/envs/preprocess.yaml
spatialsnake/workflow/envs/reclustering.yaml
spatialsnake/workflow/envs/splitting.yaml
spatialsnake/workflow/envs/transform.yaml
spatialsnake/workflow/function/export_cluster_csv.py
spatialsnake/workflow/function/get_sample.py
spatialsnake/workflow/function/legacy_anndata.py
spatialsnake/workflow/function/merfish_utils.py
spatialsnake/workflow/function/merge.py
spatialsnake/workflow/function/pca_choosing.py
spatialsnake/workflow/function/plot.py
spatialsnake/workflow/function/splitting.py
spatialsnake/workflow/function/stereoseq_selection.py
spatialsnake/workflow/function/stereoseq_spec.py
spatialsnake/workflow/function/stereoseq_v8.py
spatialsnake/workflow/function/transform.py
spatialsnake/workflow/rules/RCTD.smk
spatialsnake/workflow/rules/advance_analysis.smk
spatialsnake/workflow/rules/annotation_help.smk
spatialsnake/workflow/rules/cell2Location_run.smk
spatialsnake/workflow/rules/cellPhoneDB.smk
spatialsnake/workflow/rules/cluster.smk
spatialsnake/workflow/rules/compare_LR.smk
spatialsnake/workflow/rules/compare_gene.smk
spatialsnake/workflow/rules/enrich.smk
spatialsnake/workflow/rules/integrate.smk
spatialsnake/workflow/rules/mannul.smk
spatialsnake/workflow/rules/merge.smk
spatialsnake/workflow/rules/preprocess.smk
spatialsnake/workflow/rules/py_senic.smk
spatialsnake/workflow/rules/reannotation.smk
spatialsnake/workflow/rules/reclustering.smk
spatialsnake/workflow/rules/run_banksy.smk
spatialsnake/workflow/rules/run_cellcharter.smk
spatialsnake/workflow/rules/run_cellchat.smk
spatialsnake/workflow/rules/run_liana.smk
spatialsnake/workflow/rules/run_slice.smk
spatialsnake/workflow/scripts/Cellchat.R
spatialsnake/workflow/scripts/DEG_visualize.R
spatialsnake/workflow/scripts/DEseq2.py
spatialsnake/workflow/scripts/Multi-cellchat.py
spatialsnake/workflow/scripts/QC.py
spatialsnake/workflow/scripts/RCTD.R
spatialsnake/workflow/scripts/RCTD_visualize.py
spatialsnake/workflow/scripts/advance_analyze.py
spatialsnake/workflow/scripts/cell2Location.py
spatialsnake/workflow/scripts/cell2locate_visualize.py
spatialsnake/workflow/scripts/cellchat_compare.R
spatialsnake/workflow/scripts/cellphoneDB.py
spatialsnake/workflow/scripts/cellphoneDB_visualize.py
spatialsnake/workflow/scripts/cluster_visualize.py
spatialsnake/workflow/scripts/clustering.py
spatialsnake/workflow/scripts/diffent_analysis.R
spatialsnake/workflow/scripts/enrichment.R
spatialsnake/workflow/scripts/h5ad_to_seurat.R
spatialsnake/workflow/scripts/install_packages.R
spatialsnake/workflow/scripts/mannul_annotation.py
spatialsnake/workflow/scripts/preprocessing.py
spatialsnake/workflow/scripts/pyscenic_numpy_compat.py
spatialsnake/workflow/scripts/pysenic.py
spatialsnake/workflow/scripts/pysenic_visualize.py
spatialsnake/workflow/scripts/reannotation.py
spatialsnake/workflow/scripts/reclustering.py
spatialsnake/workflow/scripts/run_banksy.py
spatialsnake/workflow/scripts/run_cellcharter.py
spatialsnake/workflow/scripts/run_liana.py
spatialsnake/workflow/scripts/seurat_to_h5ad.R
spatialsnake/workflow/scripts/slice_out.py
spatialsnake/workflow/scripts/spatial_in.py
spatialsnake/workflow/scripts/spatial_in_multiple.py
spatialsnake/workflow/scripts/subset.py