setuptools<81,>=80.9.0
spatialdata==0.5.0
spatialdata-io==0.3.0
spatialdata-plot==0.2.11
squidpy==1.6.5
napari-spatialdata==0.5.7
numpy==2.2.6
scanpy==1.10.4
anndata==0.12.0
umap-learn==0.5.7
pandas==2.2.3
scipy==1.13.1
scikit-learn==1.7.2
numba==0.62.1
llvmlite==0.45.1
shapely==2.1.1
matplotlib==3.9.4
seaborn==0.13.2
plotnine==0.15.0
Pillow==11.3.0
cell2location==0.1.5
scvi-tools==1.4.0
zarr==2.18.7
h5py==3.14.0
tifffile==2025.8.28
imageio==2.37.0
ome-zarr==0.11.1
statsmodels==0.14.5
Pint==0.25
pyarrow==21.0.0
click==8.3.0
typer==0.16.0
docopt==0.6.2
PyYAML==6.0.3
geosketch==1.3
cell2location==0.1.5
geopandas==1.1.1
pydeseq2==0.5.2
harmonypy==0.0.10
igraph==0.11.9
louvain==0.8.2

[extended]
scikit-misc==0.5.2
dask-image==2024.5.3
ipython==9.5.0
pyogrio==0.12.1
pooch==1.8.2
dask==2024.11.2
dask-expr==1.1.19
pims==0.7
xarray==2025.1.2
pyro-ppl==1.9.1
pyro-api==0.1.1
opt-einsum==3.3.0
cellphonedb==5.0.1
torch==2.8.0
pytorch-lightning==2.5.5
cellcharter==0.3.5
cytoolz==1.0.1
ktplotspy==0.3.3
liana==1.6.1
loompy==3.0.8
pyscenic==0.12.1
leidenalg
