rdflib>=6.0.0
sparqlwrapper>=2.0.0
pandas>=2.0.0
numpy
bioregistry>=0.13.25
bioversions>=0.8.295
linkml>=1.10.0
linkml-runtime>=1.10.0
deprecated>=1.2.13
pyld
more_itertools
tqdm
pyyaml>=6.0
pyarrow==22.0.0
click
more_click
flask
pyobo>=0.12.16
semra>=0.1.4

[dev]
ruff

[docs]
sphinx>=8
sphinx-rtd-theme>=3.0
sphinx-click
sphinx-automodapi

[notebooks]
matplotlib>=3.10.7
seaborn>=0.11.0
plotly>=5.0.0
networkx>=2.8
jupyterlab>=4.0.0
ipywidgets>=8.0.0
narwhals==2.11.0
plotly==6.4.0

[tests]
pytest
coverage

[web]
flask>=3.0
flask-cors>=4.0
gunicorn>=22.0
