numpy>=1.23
pandas>=1.5
scipy>=1.9
scikit-learn>=1.2
scikit-misc>=0.3
statsmodels>=0.13
patsy>=0.5
scanpy>=1.11
anndata>=0.10
muon>=0.1
harmony-pytorch>=0.1
harmonypy>=0.0.9
scglue>=0.3
torch>=2.0
python-igraph>=0.10
leidenalg>=0.9
networkx>=3.0
POT>=0.9
pygam>=0.9
numba>=0.57
matplotlib>=3.6
seaborn>=0.12
pyyaml>=6.0
psutil>=5.9
ruamel.yaml>=0.17
pybedtools>=0.9
pyensembl>=2.3
combat>=0.3
adjustText>=1.0

[trees]
biopython>=1.80
scikit-bio>=0.5
dendropy>=4.5
