LICENSE
MANIFEST.in
README.md
deploy.sh
lint.sh
pyproject.toml
test.sh
docs/copy-yeast.md
docs/design.md
docs/measurements.md
docs/pairing.md
docs/pfizer-protein.md
docs/reference.md
docs/source-references.md
docs/species.md
docs/storage.md
orfdata/__init__.py
orfdata/build.py
orfdata/catalog.py
orfdata/cli.py
orfdata/dataset.py
orfdata/dataset_cli.py
orfdata/datasets.py
orfdata/initiation_context.py
orfdata/measurements.py
orfdata/model.py
orfdata/pairing.py
orfdata/reference.py
orfdata/reference_mapping.py
orfdata/sequence.py
orfdata/version.py
orfdata.egg-info/PKG-INFO
orfdata.egg-info/SOURCES.txt
orfdata.egg-info/dependency_links.txt
orfdata.egg-info/entry_points.txt
orfdata.egg-info/requires.txt
orfdata.egg-info/top_level.txt
orfdata/data/datasets.json
orfdata/data/orf-evidence/AUTHOR-LICENSE.txt
orfdata/data/orf-evidence/NOTICE.txt
orfdata/data/orf-evidence/catalog.json.gz
orfdata/data/orf-evidence/manifest.json
orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt
orfdata/data/uorf-evidence/NOTICE.txt
orfdata/data/uorf-evidence/catalog.json.gz
orfdata/data/uorf-evidence/manifest.json
orfdata/sources/__init__.py
orfdata/sources/copy.py
orfdata/sources/pfizer.py
tests/conftest.py
tests/test_copy.py
tests/test_cross_reference_pairing.py
tests/test_initiation_context.py
tests/test_measurements.py
tests/test_pairing.py
tests/test_pfizer.py
tests/test_reference_context.py
tests/test_reference_mapping.py
tests/test_reference_orf.py
tests/test_storage.py
tests/test_uorf_catalog.py
tests/data/copy/GSM1905474.soft
tests/data/copy/GSM1905474_KL9_fpkm.txt.gz
tests/data/copy/GSM1905476.soft
tests/data/copy/GSM1905476_KL10_fpkm.txt.gz
tests/data/copy/GSM1905478.soft
tests/data/copy/GSM1905478_KL11_fpkm.txt.gz
tests/data/copy/GSM1905479.soft
tests/data/copy/GSM1905479_KL12_fpkm.txt.gz
tests/data/copy/NOTICE.md
tests/data/copy/expected.json
tests/data/copy/geo-series.soft
tests/data/copy/manifest.json
tests/data/copy/methods.pdf
tests/data/copy/paper.xml
tests/data/copy/pmc-metadata.json
tests/data/copy/qconcat.fasta
tests/data/copy/workbook.xlsx
tests/data/pfizer/NOTICE.md
tests/data/pfizer/dog/expected.json
tests/data/pfizer/dog/manifest.json
tests/data/pfizer/dog/protein.tsv
tests/data/pfizer/dog/search.fasta
tests/data/pfizer/human/expected.json
tests/data/pfizer/human/manifest.json
tests/data/pfizer/human/protein.tsv
tests/data/pfizer/human/search.fasta
tests/data/pfizer/mouse/expected.json
tests/data/pfizer/mouse/manifest.json
tests/data/pfizer/mouse/protein.tsv
tests/data/pfizer/mouse/search.fasta
tests/data/references/README.md
tests/data/references/canis_lupus_familiaris.json
tests/data/references/context-keys-v0.4.json
tests/data/references/homo_sapiens.json
tests/data/references/mus_musculus.json
tests/data/references/saccharomyces_cerevisiae.json
tests/data/storage/README.md
tests/data/storage/generate.py
tests/data/storage/v1.json
tests/data/storage/v1.sqlite
tests/data/storage/v2.json
tests/data/storage/v2.sqlite
tests/data/storage/v3.json
tests/data/storage/v3.sqlite