Metadata-Version: 2.4
Name: root-mcp
Version: 0.1.3
Summary: Production-grade MCP server for CERN ROOT file analysis
Author: Mohamed Elashri
Maintainer: Mohamed Elashri
License: MIT License
        
        Copyright (c) 2025 Mohamed Elashri
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
        of this software and associated documentation files (the "Software"), to deal
        in the Software without restriction, including without limitation the rights
        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
        copies of the Software, and to permit persons to whom the Software is
        furnished to do so, subject to the following conditions:
        
        The above copyright notice and this permission notice shall be included in all
        copies or substantial portions of the Software.
        
        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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Project-URL: Homepage, https://github.com/MohamedElashri/root-mcp
Project-URL: Repository, https://github.com/MohamedElashri/root-mcp
Project-URL: Issues, https://github.com/MohamedElashri/root-mcp/issues
Project-URL: Documentation, https://github.com/MohamedElashri/root-mcp/tree/main/docs
Project-URL: Changelog, https://github.com/MohamedElashri/root-mcp/blob/main/CHANGELOG.md
Keywords: ROOT,CERN,HEP,MCP,particle physics
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Classifier: Topic :: Scientific/Engineering :: Physics
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: uproot<6.0.0,>=5.0.0
Requires-Dist: awkward<3.0.0,>=2.0.0
Requires-Dist: numpy<2.0.0,>=1.24.0
Requires-Dist: pandas<3.0.0,>=2.0.0
Requires-Dist: mcp>=0.9.0
Requires-Dist: pydantic<3.0.0,>=2.0.0
Requires-Dist: pydantic-settings>=2.0.0
Requires-Dist: aiofiles>=23.0.0
Requires-Dist: fsspec>=2023.0.0
Requires-Dist: pyarrow>=14.0.0
Requires-Dist: pyyaml>=6.0
Requires-Dist: xxhash>=3.0.0
Requires-Dist: scipy>=1.10.0
Requires-Dist: matplotlib>=3.7.0
Provides-Extra: dev
Requires-Dist: pytest>=7.0.0; extra == "dev"
Requires-Dist: pytest-asyncio>=0.21.0; extra == "dev"
Requires-Dist: pytest-cov>=4.0.0; extra == "dev"
Requires-Dist: black>=23.0.0; extra == "dev"
Requires-Dist: ruff>=0.1.0; extra == "dev"
Requires-Dist: ty>=0.0.2; extra == "dev"
Requires-Dist: types-PyYAML>=6.0.0.0; extra == "dev"
Requires-Dist: pre-commit>=3.0.0; extra == "dev"
Requires-Dist: build>=1.0.0; extra == "dev"
Requires-Dist: twine>=4.0.0; extra == "dev"
Provides-Extra: xrootd
Requires-Dist: XRootD>=5.5.0; extra == "xrootd"
Dynamic: license-file

# ROOT-MCP: AI-Powered HEP Analysis

[![CI](https://github.com/MohamedElashri/root-mcp/actions/workflows/ci.yml/badge.svg)](https://github.com/MohamedElashri/root-mcp/actions/workflows/ci.yml)
[![PyPI](https://img.shields.io/pypi/v/root-mcp.svg)](https://pypi.org/project/root-mcp/)
[![License](https://img.shields.io/pypi/l/root-mcp.svg)](LICENSE)
[![Language](https://img.shields.io/badge/language-Python-blue.svg)](https://www.python.org/)

**ROOT-MCP** empowers Large Language Models (LLMs) to natively understand and analyze CERN ROOT files.

By exposing a set of specialized tools via the [Model Context Protocol (MCP)](https://modelcontextprotocol.io/), it turns Claude (and other MCP-compliant agents) into capable physics research assistants that can:
- **Inspect** ROOT file structures (Trees, Branches, Histograms)
- **Analyze** data distributions (Compute Histograms, Statistics)
- **Compute** kinematic quantities (invariant masses, angular correlations for Dalitz plots)
- **Visualize** results directly in the chat
- **Filter** data using physics cuts ("selections")

> **Why this matters**: Instead of asking an LLM to "write a script" that you have to debug and run, you can ask the LLM to *"Check the muon pT distribution in this file"* and it will **just do it**.

---

## Architecture

ROOT-MCP features a **dual-mode architecture**:

- **Core Mode**: File I/O, data reading, and basic statistics
- **Extended Mode**: Full analysis capabilities including fitting, kinematics, and correlations

The mode is controlled via configuration, and the server automatically loads only the components you need. Runtime mode switching is also available.

## Quick Start

### 1. Install

```bash
pip install root-mcp
```

Optional: For remote file access via XRootD protocol:
```bash
pip install "root-mcp[xrootd]"
```

### 2. Configure

Create a `config.yaml` and set your preferred mode:

```yaml
# Server settings
server:
  name: "root-mcp"
  mode: "extended"  # Options: "core" or "extended"

# Data resources
resources:
  - name: "my_analysis"
    uri: "file:///Users/me/data"
    allowed_patterns: ["*.root"]

# Security
security:
  allowed_roots:
    - "/Users/me/data"

# Output directory for exports
output:
  export_base_path: "/Users/me/exports"
```

**Mode Selection:**
- `mode: "core"` - Lightweight mode for file operations and basic statistics
- `mode: "extended"` - Full analysis features (histograms, fitting, kinematics, correlations)

You can switch modes at runtime using the `switch_mode` tool without restarting the server.

### 3. Run with Claude Desktop

Add to your `claude_desktop_config.json`:

```json
{
  "mcpServers": {
    "root-mcp": {
      "command": "root-mcp",
      "env": {
        "ROOT_MCP_CONFIG": "/path/to/config.yaml"
      }
    }
  }
}
```

## Documentation

- **[Full Documentation](docs/README.md)**: The complete guide.
- **[Tool Reference](docs/api/tools.md)**: Detailed API definition for all tools.
- **[LLM Integration Guide](docs/guides/llm_integration.md)**: How to prompt and work with the agent.

## Citation

If you use ROOT-MCP in your research, please cite:

```bibtex
@software{root_mcp,
  title = {ROOT-MCP: Production-Grade MCP Server for CERN ROOT Files},
  author = {Mohamed Elashri},
  year = {2025},
  url = {https://github.com/MohamedElashri/root-mcp}
}
```
## License

MIT License - see [LICENSE](LICENSE) for details.
