COMMERCIAL_LICENSE.md
LICENSE
README.md
pyproject.toml
biogpu/__init__.py
biogpu/cli.py
biogpu/analysis/raw_native_stability_v59.py
biogpu/analysis/zenodo_condition_spot.py
biogpu/analysis/zenodo_pulse_controls.py
biogpu/analysis/zenodo_pulse_level.py
biogpu/analysis/zenodo_pulse_readout.py
biogpu/analysis/zenodo_pulse_v16.py
biogpu/analysis/zenodo_pulse_v17.py
biogpu/api/__init__.py
biogpu/api/beta_server_v40.py
biogpu/api/hosted_server_v43.py
biogpu/api/server.py
biogpu/apis/__init__.py
biogpu/apis/axion_client_v37.py
biogpu/apis/base_external_api_v37.py
biogpu/apis/dandi_client_v37.py
biogpu/apis/finalspark_client_v37.py
biogpu/apis/mcs_bridge_v37.py
biogpu/apis/registry_v37.py
biogpu/apis/threebrain_client_v37.py
biogpu/benchmarks/__init__.py
biogpu/benchmarks/ablation.py
biogpu/benchmarks/baselines.py
biogpu/benchmarks/biogpu_v18_runtime_analysis.py
biogpu/benchmarks/biogpu_v19_engineering_analysis.py
biogpu/benchmarks/biogpu_v20_prototype_analysis.py
biogpu/benchmarks/biogpu_v21_stack_analysis.py
biogpu/benchmarks/biogpu_v21_wetware_stack.py
biogpu/benchmarks/biogpu_v22_hardware_blueprint.py
biogpu/benchmarks/biogpu_v23_benchmark_registry.py
biogpu/benchmarks/biogpu_v24_session_manager.py
biogpu/benchmarks/biogpu_v25_vendor_adapters.py
biogpu/benchmarks/biogpu_v26_encoder_layer.py
biogpu/benchmarks/biogpu_v27_readout_layer.py
biogpu/benchmarks/biogpu_v28_closed_loop_controller.py
biogpu/benchmarks/biogpu_v29_energy_performance.py
biogpu/benchmarks/biogpu_v30_whitepaper_package.py
biogpu/benchmarks/biogpu_v31_e2e_integration.py
biogpu/benchmarks/biogpu_v32_realdata_replay.py
biogpu/benchmarks/biogpu_v33_realdata_sweep.py
biogpu/benchmarks/biogpu_v34_powerpc_runner.py
biogpu/benchmarks/biogpu_v35_release_hygiene.py
biogpu/benchmarks/biogpu_v36_lineage_bootstrap.py
biogpu/benchmarks/biogpu_v37_external_api_integration.py
biogpu/benchmarks/biogpu_v38_biollm_tool_interface.py
biogpu/benchmarks/biogpu_v39_enterprise_package.py
biogpu/benchmarks/biogpu_v40_beta_release_architecture.py
biogpu/benchmarks/biogpu_v41_access_audit.py
biogpu/benchmarks/biogpu_v42_dataset_registry.py
biogpu/benchmarks/biogpu_v43_hosted_server.py
biogpu/benchmarks/biogpu_v45_master_plan.py
biogpu/benchmarks/biogpu_v46_clean_release.py
biogpu/benchmarks/biogpu_v47_final_pc_patch.py
biogpu/benchmarks/biogpu_v48_product_identity.py
biogpu/benchmarks/biogpu_v49_naming_os_strategy.py
biogpu/benchmarks/biogpu_v50_differentiation_roadmap.py
biogpu/benchmarks/biogpu_v510_project_alignment_claim_audit.py
biogpu/benchmarks/biogpu_v511_bic_os_boot_readiness.py
biogpu/benchmarks/biogpu_v512_biosdk_evidence_pack.py
biogpu/benchmarks/biogpu_v513_biosdk_core_api.py
biogpu/benchmarks/biogpu_v514_sample_acquisition_gate.py
biogpu/benchmarks/biogpu_v515_dandi_nwb_task_validation.py
biogpu/benchmarks/biogpu_v516_dandi_nwb_task_benchmark.py
biogpu/benchmarks/biogpu_v517_external_readonly_api_gate.py
biogpu/benchmarks/biogpu_v518_allen_orientation_gate.py
biogpu/benchmarks/biogpu_v519_vendor_user_upload_gate.py
biogpu/benchmarks/biogpu_v51_dataset_api_expansion.py
biogpu/benchmarks/biogpu_v520_allen_orientation_benchmark.py
biogpu/benchmarks/biogpu_v521_cross_dataset_evidence_pack.py
biogpu/benchmarks/biogpu_v522_biosdk_public_examples.py
biogpu/benchmarks/biogpu_v523_user_upload_fixture.py
biogpu/benchmarks/biogpu_v524_external_export_validation.py
biogpu/benchmarks/biogpu_v525_biosdk_release_candidate_evidence.py
biogpu/benchmarks/biogpu_v526_durable_scheduler_worker.py
biogpu/benchmarks/biogpu_v527_scheduler_api_facade.py
biogpu/benchmarks/biogpu_v528_authenticated_local_service.py
biogpu/benchmarks/biogpu_v529_supervised_runtime.py
biogpu/benchmarks/biogpu_v52_nsi_interface.py
biogpu/benchmarks/biogpu_v530_runtime_observability.py
biogpu/benchmarks/biogpu_v531_recovery_alerting.py
biogpu/benchmarks/biogpu_v532_bounded_retry_dead_letter.py
biogpu/benchmarks/biogpu_v533_operator_incident_retention.py
biogpu/benchmarks/biogpu_v534_tamper_evident_incident_ledger.py
biogpu/benchmarks/biogpu_v535_tenant_incident_permissions.py
biogpu/benchmarks/biogpu_v536_dashboard_route_contract.py
biogpu/benchmarks/biogpu_v537_identity_provider_contract.py
biogpu/benchmarks/biogpu_v538_storage_retention_contract.py
biogpu/benchmarks/biogpu_v539_packaged_sdk_install_gate.py
biogpu/benchmarks/biogpu_v53_evidence_ledger.py
biogpu/benchmarks/biogpu_v540_private_beta_onboarding.py
biogpu/benchmarks/biogpu_v541_clean_room_install_report.py
biogpu/benchmarks/biogpu_v542_signed_artifact_provenance.py
biogpu/benchmarks/biogpu_v543_release_approval_revocation.py
biogpu/benchmarks/biogpu_v544_private_registry_handoff.py
biogpu/benchmarks/biogpu_v545_recipient_onboarding_audit.py
biogpu/benchmarks/biogpu_v546_private_registry_auth_feed.py
biogpu/benchmarks/biogpu_v547_registry_revoke_yank_notification.py
biogpu/benchmarks/biogpu_v548_release_operations_handoff.py
biogpu/benchmarks/biogpu_v549_production_readiness_gap.py
biogpu/benchmarks/biogpu_v54_llm_agent_bridge.py
biogpu/benchmarks/biogpu_v550_external_acceptance_intake.py
biogpu/benchmarks/biogpu_v551_partner_dataroom_review_packet.py
biogpu/benchmarks/biogpu_v552_external_reviewer_response_intake.py
biogpu/benchmarks/biogpu_v553_external_review_finding_triage.py
biogpu/benchmarks/biogpu_v554_remediation_evidence_closure.py
biogpu/benchmarks/biogpu_v555_closure_signoff_registry.py
biogpu/benchmarks/biogpu_v556_external_signoff_transcript_intake.py
biogpu/benchmarks/biogpu_v55_control_plane_queue.py
biogpu/benchmarks/biogpu_v56_raw_hdf5_structure.py
biogpu/benchmarks/biogpu_v57_raw_preprocessed_alignment.py
biogpu/benchmarks/biogpu_v58_raw_native_benchmark.py
biogpu/benchmarks/biogpu_v59_raw_native_stability_audit.py
biogpu/benchmarks/biogpu_v60_production_foundation.py
biogpu/benchmarks/delayed_match.py
biogpu/benchmarks/noise.py
biogpu/benchmarks/orientation.py
biogpu/benchmarks/pipeline.py
biogpu/benchmarks/real_spike_profile.py
biogpu/benchmarks/registry_v21.py
biogpu/benchmarks/registry_v23.py
biogpu/benchmarks/sequence.py
biogpu/benchmarks/streaming.py
biogpu/benchmarks/task_aligned_real.py
biogpu/benchmarks/zenodo_condition_spot_analysis.py
biogpu/benchmarks/zenodo_pulse_controls_analysis.py
biogpu/benchmarks/zenodo_pulse_level_analysis.py
biogpu/benchmarks/zenodo_pulse_readout_analysis.py
biogpu/benchmarks/zenodo_pulse_v16_analysis.py
biogpu/benchmarks/zenodo_pulse_v16_from_v15.py
biogpu/benchmarks/zenodo_pulse_v17_analysis.py
biogpu/benchmarks/zenodo_pulse_v17_from_v15.py
biogpu/benchmarks/zenodo_real_dataset_profile.py
biogpu/benchmarks/zenodo_stimulus_reconstruction.py
biogpu/beta/__init__.py
biogpu/beta/access_policy_v41.py
biogpu/beta/architecture_v40.py
biogpu/beta/control_plane_v55.py
biogpu/beta/job_model_v43.py
biogpu/beta/master_plan_v45.py
biogpu/claims/__init__.py
biogpu/claims/project_alignment_v510.py
biogpu/closed_loop/__init__.py
biogpu/closed_loop/base_v28.py
biogpu/closed_loop/controller_v28.py
biogpu/closed_loop/policy_v28.py
biogpu/closed_loop/registry_v28.py
biogpu/closed_loop/reward_v28.py
biogpu/core/__init__.py
biogpu/core/pipeline_v2.py
biogpu/core/evidence/__init__.py
biogpu/core/evidence/bundle_v2.py
biogpu/core/features/__init__.py
biogpu/core/features/extractor_v2.py
biogpu/core/ingest/__init__.py
biogpu/core/ingest/loader_v2.py
biogpu/core/readout/__init__.py
biogpu/core/readout/classifier_v2.py
biogpu/dashboard/__init__.py
biogpu/dashboard/app.py
biogpu/dashboard/generate_static.py
biogpu/dashboard/server_v71.py
biogpu/data/__init__.py
biogpu/data/energy.py
biogpu/data/energy_accounting.py
biogpu/data/experiment_logger.py
biogpu/data/hdf5_store.py
biogpu/data/memory_metrics.py
biogpu/data/nwb_export.py
biogpu/data/plots.py
biogpu/data/reports.py
biogpu/data/versioning.py
biogpu/data_ingest/__init__.py
biogpu/data_ingest/brc2602_import.py
biogpu/data_ingest/brc_import.py
biogpu/data_ingest/dandi_discovery.py
biogpu/data_ingest/dandi_nwb.py
biogpu/data_ingest/nwb_stimulus_discovery.py
biogpu/data_ingest/public_data_report.py
biogpu/data_ingest/raw_native_benchmark_v58.py
biogpu/data_ingest/raw_preprocessed_alignment_v57.py
biogpu/data_ingest/stimulus_windows.py
biogpu/data_ingest/zenodo_manifest.py
biogpu/data_ingest/zenodo_mea2100.py
biogpu/data_ingest/zenodo_mea2100_preprocessed.py
biogpu/data_ingest/zenodo_protocol_windows.py
biogpu/data_ingest/zenodo_raw_hdf5_gate.py
biogpu/data_ingest/zenodo_raw_hdf5_v56.py
biogpu/data_ingest/zenodo_stimulus_reconstruction.py
biogpu/datasets/__init__.py
biogpu/datasets/asset_integration_v46.py
biogpu/datasets/delayed_match.py
biogpu/datasets/importers_v42.py
biogpu/datasets/noise.py
biogpu/datasets/orientation.py
biogpu/datasets/registry_v42.py
biogpu/datasets/sequences.py
biogpu/datasets/streaming.py
biogpu/decoding/__init__.py
biogpu/decoding/evaluation.py
biogpu/decoding/linear_readout.py
biogpu/decoding/ridge_readout.py
biogpu/diagnostics/__init__.py
biogpu/diagnostics/regression.py
biogpu/diagnostics/repeated_seed.py
biogpu/encoding/__init__.py
biogpu/encoding/base_v26.py
biogpu/encoding/hybrid_v26.py
biogpu/encoding/rate_encoder.py
biogpu/encoding/rate_v26.py
biogpu/encoding/registry_v26.py
biogpu/encoding/spatial_encoder.py
biogpu/encoding/spatial_v26.py
biogpu/encoding/temporal_v26.py
biogpu/encoding/v1_encoder.py
biogpu/enterprise/__init__.py
biogpu/enterprise/licensing_v39.py
biogpu/enterprise/security_data_v45.py
biogpu/evidence/__init__.py
biogpu/evidence/ledger_v53.py
biogpu/feedback/__init__.py
biogpu/feedback/controller.py
biogpu/hardware/__init__.py
biogpu/hardware/blueprint_v22.py
biogpu/integration/__init__.py
biogpu/integration/e2e_v31.py
biogpu/integration/realdata_replay_v32.py
biogpu/integration/realdata_sweep_v33.py
biogpu/lab/__init__.py
biogpu/lab/approval_v74.py
biogpu/lab/closed_loop_v75.py
biogpu/llm/__init__.py
biogpu/llm/agent_bridge_v54.py
biogpu/llm/tool_interface_v38.py
biogpu/metrics/__init__.py
biogpu/metrics/baseline_v29.py
biogpu/metrics/energy_model_v29.py
biogpu/metrics/latency_model_v29.py
biogpu/nsi/__init__.py
biogpu/nsi/adapters/__init__.py
biogpu/nsi/adapters/dandi/__init__.py
biogpu/nsi/adapters/edf/__init__.py
biogpu/nsi/adapters/finalspark/__init__.py
biogpu/nsi/adapters/gcp2/__init__.py
biogpu/nsi/adapters/giroldini/__init__.py
biogpu/nsi/adapters/mcs/__init__.py
biogpu/nsi/adapters/tressoldi/__init__.py
biogpu/os/__init__.py
biogpu/os/blueprint_v49.py
biogpu/os/boot_readiness_v511.py
biogpu/os/differentiation_v50.py
biogpu/os/unlock_v70.py
biogpu/paper/__init__.py
biogpu/paper/package_v30.py
biogpu/plugins/__init__.py
biogpu/plugins/manager_v72.py
biogpu/powerpc/__init__.py
biogpu/powerpc/runner_plan_v34.py
biogpu/product/__init__.py
biogpu/product/identity_v48.py
biogpu/product/identity_v49.py
biogpu/production/__init__.py
biogpu/production/bootstrap_v60.py
biogpu/production/config_v60.py
biogpu/production/daemon_v612.py
biogpu/production/foundation_v60.py
biogpu/production/replay_worker_v81.py
biogpu/reading/__init__.py
biogpu/reading/feature_extractor.py
biogpu/reading/spike_reader.py
biogpu/readout/__init__.py
biogpu/readout/base_v27.py
biogpu/readout/centroid_v27.py
biogpu/readout/linear_v27.py
biogpu/readout/online_v27.py
biogpu/readout/registry_v27.py
biogpu/release/__init__.py
biogpu/release/bundle_v80.py
biogpu/release/clean_release_v46.py
biogpu/release/final_pc_patch_v47.py
biogpu/release/pc_validation_bundle_v50.py
biogpu/release/release_hygiene_v35.py
biogpu/reservoir/__init__.py
biogpu/reservoir/simulated_living.py
biogpu/reservoir/snn_reservoir.py
biogpu/reservoir/v1_core.py
biogpu/runtime/__init__.py
biogpu/runtime/contracts.py
biogpu/runtime/dashboard_routes_v536.py
biogpu/runtime/durable_scheduler_v526.py
biogpu/runtime/engineering_v19.py
biogpu/runtime/identity_provider_contract_v537.py
biogpu/runtime/incident_ledger_v534.py
biogpu/runtime/incident_permissions_v535.py
biogpu/runtime/incident_workflow_v533.py
biogpu/runtime/local_service_v528.py
biogpu/runtime/observability_v530.py
biogpu/runtime/prototype_v20.py
biogpu/runtime/recovery_v531.py
biogpu/runtime/replay_runtime.py
biogpu/runtime/retry_policy_v532.py
biogpu/runtime/scheduler_api_v527.py
biogpu/runtime/session_manager_v24.py
biogpu/runtime/session_v21.py
biogpu/runtime/storage_retention_v538.py
biogpu/runtime/supervised_runtime_v529.py
biogpu/runtime/wetware_v21.py
biogpu/safety/__init__.py
biogpu/safety/boundary_v35.py
biogpu/safety/governance_v35.py
biogpu/schemas/__init__.py
biogpu/schemas/types.py
biogpu/sdk/__init__.py
biogpu/sdk/allen_orientation_benchmark_v520.py
biogpu/sdk/allen_orientation_v518.py
biogpu/sdk/artifact_provenance_v542.py
biogpu/sdk/ci_gates_v67.py
biogpu/sdk/clean_room_install_report_v541.py
biogpu/sdk/closure_signoff_registry_v555.py
biogpu/sdk/core_v513.py
biogpu/sdk/cross_dataset_evidence_v521.py
biogpu/sdk/evidence_pack_v512.py
biogpu/sdk/external_acceptance_intake_v550.py
biogpu/sdk/external_export_validation_v524.py
biogpu/sdk/external_readonly_v517.py
biogpu/sdk/external_review_finding_triage_v553.py
biogpu/sdk/external_reviewer_response_intake_v552.py
biogpu/sdk/external_signoff_transcript_intake_v556.py
biogpu/sdk/nwb_task_benchmark_v516.py
biogpu/sdk/nwb_task_validation_v515.py
biogpu/sdk/package_install_gate_v539.py
biogpu/sdk/partner_dataroom_review_packet_v551.py
biogpu/sdk/private_beta_onboarding_v540.py
biogpu/sdk/private_registry_auth_feed_v546.py
biogpu/sdk/private_registry_handoff_v544.py
biogpu/sdk/production_readiness_gap_v549.py
biogpu/sdk/public_examples_v522.py
biogpu/sdk/recipient_onboarding_audit_v545.py
biogpu/sdk/registry_revoke_yank_notification_v547.py
biogpu/sdk/release_approval_v543.py
biogpu/sdk/release_candidate_evidence_v525.py
biogpu/sdk/release_operations_handoff_v548.py
biogpu/sdk/remediation_evidence_closure_v554.py
biogpu/sdk/sample_acquisition_v514.py
biogpu/sdk/signing_v66.py
biogpu/sdk/user_upload_fixture_v523.py
biogpu/sdk/vendor_upload_v519.py
biogpu/simulators/__init__.py
biogpu/simulators/mea_v81.py
biogpu/standards/__init__.py
biogpu/standards/nsi_cli_v52.py
biogpu/standards/nsi_conformance_v52.py
biogpu/standards/nsi_v10.py
biogpu/statistics/__init__.py
biogpu/statistics/bootstrap_v36.py
biogpu/statistics/lineage_split_v36.py
biogpu/stimulation/__init__.py
biogpu/stimulation/planner.py
biogpu/stimulation/safety.py
biogpu/substrates/__init__.py
biogpu/substrates/base.py
biogpu/substrates/hd_mea_reference.py
biogpu/substrates/live_mea_adapter.py
biogpu/substrates/maxone_like.py
biogpu/substrates/memristor_base.py
biogpu/substrates/neuromorphic_base.py
biogpu/substrates/organoid_mea_future.py
biogpu/substrates/real_mea_base.py
biogpu/substrates/simulated_mea.py
biogpu/substrates/vendor_registry_v25.py
biogpu/substrates/vendors/__init__.py
biogpu/substrates/vendors/axion_maestro_v25.py
biogpu/substrates/vendors/base_v25.py
biogpu/substrates/vendors/finalspark_remote_v25.py
biogpu/substrates/vendors/mcs_mea2100_v25.py
biogpu/substrates/vendors/threebrain_hdmea_v25.py
biogpu/telemetry/__init__.py
biogpu/telemetry/pipeline_v73.py
biogpu/validation/ablation_v85.py
biogpu/validation/baselines_v85.py
biogpu/wetware/__init__.py
biogpu/wetware/provisional_stack_v21.py
biosdk/__init__.py
biosdk.egg-info/PKG-INFO
biosdk.egg-info/SOURCES.txt
biosdk.egg-info/dependency_links.txt
biosdk.egg-info/entry_points.txt
biosdk.egg-info/requires.txt
biosdk.egg-info/top_level.txt