LICENSE.rst
README.md
setup.cfg
setup.py
scripts/SAM2profilesGenomic.py
scripts/SAM2profilesTranscripts.py
scripts/csv2pickle.py
scripts/fasta2slidingWindows.py
scripts/genome2WindowsGTF.py
scripts/genomeNascentFolding.py
scripts/mergeSalmon.py
scripts/polyAfraction.py
trxtools/__init__.py
trxtools/methods.py
trxtools/plotting.py
trxtools.egg-info/PKG-INFO
trxtools.egg-info/SOURCES.txt
trxtools.egg-info/dependency_links.txt
trxtools.egg-info/requires.txt
trxtools.egg-info/top_level.txt
trxtools/folding/__init__.py
trxtools/folding/assays.py
trxtools/folding/nascent.py
trxtools/folding/secondary.py
trxtools/profiles/BigWig.py
trxtools/profiles/__init__.py
trxtools/profiles/metaprofiles.py
trxtools/profiles/profileTools.py
trxtools/sam/SAMgeneral.py
trxtools/sam/SAMgenome.py
trxtools/sam/SAMtranscripts.py
trxtools/sam/__init__.py
trxtools/utils/__init__.py
trxtools/utils/bash.py
trxtools/utils/files.py
trxtools/utils/goEnrichment.py
trxtools/utils/names.py
trxtools/utils/sequences.py
trxtools/utils/stats.py