__pycache__/
*.py[cod]
*$py.class
*.so
.pytest_cache/
.ruff_cache/
.coverage
htmlcov/
*.egg-info/
.eggs/
dist/
build/
.venv/
venv/
env/

*.h5ad
!tests/**/*.h5ad
.ipynb_checkpoints/
*.zip
.DS_Store

# Model weights and local training artifacts
*.gguf
*.safetensors
*.tgz
*.tar.gz
cache/
unsloth_compiled_cache/
docs/api/generated/

# Uploaded: src/, docs/, tests/ (except the three files below), and the
# packaging files (README, CHANGELOG, LICENSE, CITATION.cff, SECURITY.md,
# pyproject.toml, MANIFEST.in, setup.cfg, .gitignore, .gitattributes,
# .readthedocs.yaml, .github/workflows).
# Not uploaded:
data/
scripts/
DEVLOG.md
AGENTS.md
review.md
AnnoTuneAgent_Design.md
tests/test_action_arbiter.py
tests/test_action_arbiter_eval.py
tests/test_prepare_sft.py
