.gitignore
.readthedocs.yml
CITATION.cff
README.md
license.md
pyproject.toml
.github/workflows/python-app.yml
.github/workflows/release.yml
dev/README.md
dev/command_line_demo.sh
dev/gen_sweep_configs.py
dev/old-readme.md
dev/perpl_modelling.py
dev/perpl_rel_posns.py
dev/experiments/experiment_1/config.yaml
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/source/conf.py
docs/source/index.rst
docs/source/modules.rst
docs/source/perpl.io.rst
docs/source/perpl.modelling.rst
docs/source/perpl.rst
notebooks/make_ACTN2_Affimer_PERPL_plots.py
notebooks/make_ACTN2_mEos_PERPL_plots.py
notebooks/make_DNA_origami_PERPL_plots.py
notebooks/make_Nup107_Z_PERPL_plots.py
notebooks/make_Nup107_reconstructions.py
notebooks/make_Zdisk_Palm3d_data_reconstructions.py
notebooks/make_mEos_LASP2andMYPN_PERPL_plots.py
src/perpl/__init__.py
src/perpl/relative_positions.py
src/perpl/rot_2d_symm_fit.py
src/perpl.egg-info/PKG-INFO
src/perpl.egg-info/SOURCES.txt
src/perpl.egg-info/dependency_links.txt
src/perpl.egg-info/entry_points.txt
src/perpl.egg-info/requires.txt
src/perpl.egg-info/top_level.txt
src/perpl/io/__init__.py
src/perpl/io/plotting.py
src/perpl/io/reports.py
src/perpl/io/utils.py
src/perpl/modelling/__init__.py
src/perpl/modelling/background_models.py
src/perpl/modelling/centriole_analysis.py
src/perpl/modelling/dna_paint_data_fitting.py
src/perpl/modelling/linearrepeatmodels.py
src/perpl/modelling/modelling_general.py
src/perpl/modelling/models_2d_distances.py
src/perpl/modelling/models_2d_distances_normalised.py
src/perpl/modelling/polyhedramodelling.py
src/perpl/modelling/two_layer_fitting.py
src/perpl/modelling/zdisk_modelling.py
src/perpl/modelling/zdisk_plots.py
src/perpl/statistics/__init.py__
src/perpl/statistics/modelstats.py
tests/test_linearrepeatmodels.py
tests/test_plotting.py
tests/test_relative_positions.py
tests/test_utils.py