.coveragerc
.gitignore
.isort.cfg
.pre-commit-config.yaml
.readthedocs.yml
AUTHORS.md
CHANGELOG.md
CONTRIBUTING.rst
LICENSE.txt
README.md
environment.yml
mkdocs.yml
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/ISSUE_TEMPLATE/bug_report.md
docs/arguments-reference.md
docs/basic-usage.md
docs/citing.md
docs/how-it-works.md
docs/index.md
docs/installation.md
docs/interactions.md
docs/intervis.md
docs/assets/IFP.png
docs/assets/Tab_1.png
docs/assets/Tab_2.png
docs/assets/Tab_3.png
docs/assets/Tab_4.png
docs/assets/Tab_5.png
docs/assets/global_panel.png
docs/assets/intervis.png
docs/assets/interactions/cc.png
docs/assets/interactions/e2f.png
docs/assets/interactions/f2f.png
docs/assets/interactions/hb.png
docs/assets/interactions/hp.png
docs/assets/interactions/met.png
docs/assets/interactions/pian.png
docs/assets/interactions/picat.png
docs/assets/interactions/sb.png
docs/assets/interactions/vdw.png
docs/assets/interactions/wb.png
docs/assets/interactions/xb.png
docs/icons/imap.png
docs/icons/logo.svg
docs/lib/bindings/utils.js
docs/lib/tom-select/tom-select.complete.min.js
docs/lib/tom-select/tom-select.css
docs/lib/vis-9.1.2/vis-network.css
docs/lib/vis-9.1.2/vis-network.min.js
examples/example_script.py
examples/T1/hmr_cionize_ions_solvent_sc150mM_WRAPPED_RENUM.pdb
examples/T1/traj_sample.dcd
examples/T1/outputs/hmr_cionize_ions_solvent_sc150mM_WRAPPED_RENUM.pdb
examples/T1/outputs/prot-dna_InterMap.pickle
lib/bindings/utils.js
lib/tom-select/tom-select.complete.min.js
lib/tom-select/tom-select.css
lib/vis-9.1.2/vis-network.css
lib/vis-9.1.2/vis-network.min.js
src/intermap/binary_imap.html
src/intermap/commons.py
src/intermap/runner.py
src/intermap.egg-info/PKG-INFO
src/intermap.egg-info/SOURCES.txt
src/intermap.egg-info/dependency_links.txt
src/intermap.egg-info/entry_points.txt
src/intermap.egg-info/not-zip-safe
src/intermap.egg-info/requires.txt
src/intermap.egg-info/top_level.txt
src/intermap/interactions/__init__.py
src/intermap/interactions/aro.py
src/intermap/interactions/geometry.py
src/intermap/interactions/others.py
src/intermap/interactions/runners.py
src/intermap/interactions/waters.py
src/intermap/intervis/__init__.py
src/intermap/intervis/run.py
src/intermap/intervis/app/.main_original.pyold
src/intermap/intervis/app/__init__.py
src/intermap/intervis/app/css.py
src/intermap/intervis/app/helpers.py
src/intermap/intervis/app/icsv.py
src/intermap/intervis/app/main.py
src/intermap/intervis/app/plots.py
src/intermap/intervis/app/ui.py
src/intermap/intervis/statics/Untitled.png
src/intermap/intervis/statics/favicon-32x32.png
src/intermap/intervis/tabs/Tab_1.py
src/intermap/intervis/tabs/Tab_2.py
src/intermap/intervis/tabs/Tab_3.py
src/intermap/intervis/tabs/Tab_4.py
src/intermap/intervis/tabs/Tab_5.py
src/intermap/intervis/tabs/__init__.py
src/intermap/intervis/tabs/basetab.py
src/intermap/intervis/tabs/heatmap.py
src/intermap/managers/__init__.py
src/intermap/managers/config.py
src/intermap/managers/container.py
src/intermap/managers/cutoffs.py
src/intermap/managers/indices.py
src/intermap/utils/__init__.py
src/intermap/utils/interconvert.py
tests/__init__.py
tests/conftest.py
tests/test_commons.py
tests/test_e2e.py
tests/data/T2/generic.dcd
tests/data/T2/generic.pdb
tests/interactions/__init__.py
tests/interactions/test_aro.py
tests/interactions/test_geometry.py
tests/interactions/test_others.py
tests/interactions/test_waters.py
tests/intervis/__init__.py
tests/intervis/test_intervis.py
tests/intervis/test_main_helper.py
tests/intervis/test_tabs.py
tests/intervis/test_ui_helpers.py
tests/managers/__init__.py
tests/managers/test_config_cli.py
tests/managers/test_config_parsing.py
tests/managers/test_config_validation.py
tests/managers/test_container.py
tests/managers/test_cutoffs.py
tests/managers/test_indices.py