LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
pyprophet/__init__.py
pyprophet/_base.py
pyprophet/_config.py
pyprophet/filter.py
pyprophet/ipf.py
pyprophet/levels_contexts.py
pyprophet/main.py
pyprophet/report.py
pyprophet/split.py
pyprophet/stats.py
pyprophet/util.py
pyprophet/version_check.py
pyprophet.egg-info/PKG-INFO
pyprophet.egg-info/SOURCES.txt
pyprophet.egg-info/dependency_links.txt
pyprophet.egg-info/entry_points.txt
pyprophet.egg-info/not-zip-safe
pyprophet.egg-info/requires.txt
pyprophet.egg-info/top_level.txt
pyprophet/cli/__init__.py
pyprophet/cli/export.py
pyprophet/cli/ipf.py
pyprophet/cli/levels_context.py
pyprophet/cli/merge.py
pyprophet/cli/score.py
pyprophet/cli/util.py
pyprophet/export/__init__.py
pyprophet/export/calibration_report.py
pyprophet/export/export_compound.py
pyprophet/export/export_report.py
pyprophet/glyco/__init__.py
pyprophet/glyco/export.py
pyprophet/glyco/glycoform.py
pyprophet/glyco/report.py
pyprophet/glyco/scoring.py
pyprophet/glyco/stats.py
pyprophet/glyco/pepmass/__init__.py
pyprophet/glyco/pepmass/glycomass.py
pyprophet/glyco/pepmass/modmass.py
pyprophet/glyco/pepmass/pepmass.py
pyprophet/io/__init__.py
pyprophet/io/_base.py
pyprophet/io/dispatcher.py
pyprophet/io/util.py
pyprophet/io/export/__init__.py
pyprophet/io/export/osw.py
pyprophet/io/export/parquet.py
pyprophet/io/export/split_parquet.py
pyprophet/io/export/sqmass.py
pyprophet/io/ipf/__init__.py
pyprophet/io/ipf/osw.py
pyprophet/io/ipf/parquet.py
pyprophet/io/ipf/split_parquet.py
pyprophet/io/ipf/tsv.py
pyprophet/io/levels_context/__init__.py
pyprophet/io/levels_context/osw.py
pyprophet/io/levels_context/parquet.py
pyprophet/io/levels_context/split_parquet.py
pyprophet/io/scoring/__init__.py
pyprophet/io/scoring/osw.py
pyprophet/io/scoring/parquet.py
pyprophet/io/scoring/split_parquet.py
pyprophet/io/scoring/tsv.py
pyprophet/scoring/__init__.py
pyprophet/scoring/_optimized.c
pyprophet/scoring/_optimized.pyx
pyprophet/scoring/classifiers.py
pyprophet/scoring/data_handling.py
pyprophet/scoring/optimized.py
pyprophet/scoring/pyprophet.py
pyprophet/scoring/runner.py
pyprophet/scoring/semi_supervised.py
sandbox/compare.py
sandbox/compare_classifiers.py
sandbox/compare_gauss_kernel_density_estimate.py
sandbox/export_parquet.py
sandbox/ludovic.py
sandbox/test_pyprophet_export_parquet.py
sandbox/test_statsmodels_kde.py
tests/test_data_handling.py
tests/test_io_ipf.py
tests/test_io_levels_contexts.py
tests/test_io_scoring.py
tests/test_ipf.py
tests/test_optimized.py
tests/test_osw_export_score_views.py
tests/test_pyprophet_export.py
tests/test_pyprophet_ipf.py
tests/test_pyprophet_levels_contexts.py
tests/test_pyprophet_score.py
tests/test_stats.py
tests/test_version_check.py