Click
loguru
duckdb
duckdb-extensions
duckdb-extension-sqlite-scanner
numpy>=1.26.4
scipy
pandas==2.2.3
polars>=1.28.1
cython
scikit-learn>=1.5
xgboost-cpu>=2.1.4
matplotlib
pypdf
psutil
pyopenms
lxml
packaging

[dev]
pyprophet[testing]
pyprophet[docs]
black
ruff
mypy

[docs]
sphinx
sphinx-copybutton
sphinx_rtd_theme
pydata_sphinx_theme
sphinx-click

[parquet]
pyarrow

[testing]
pytest
pytest-regtest
pytest-xdist
