{% extends "base.html" %} {% block content %} This page informs you of the mapping depth coverage. Some regions are detected with an unusual depth coverage and are showed below.

1 - Coverage

The graphics shows the coverage as function of the position in the genome.
Mapping is split as multiple report for interactive graphics. {{ list_submapping }}

2 - Z-Score distribution

If everything is alright, we may see a Gaussian distribution center on 0. The predicted Gaussian has as parameter mu={{ mu }} and sigma={{ sigma }}.

3 - Low coverage region

Region with a zscore lower than {{ low_cov_threshold_2 }} and at least one base with a zscore lower than {{ low_cov_threshold }} are detected as low coverage region. Thus, there are {{ nb_low_region }} low coverage regions. {{ low_coverage }}

4 - High coverage region

Region with a zscore higher than {{ high_cov_threshold_2 }} and at least on base with a zscore higher than {{ high_cov_threshold }} are detected as high coverage region. Thus, there are {{ nb_high_region }} high coverage regions. {{ high_coverage }}
{% endblock %}