pyensembl>=2.27.2
# Varcode 10 is the tested major version (CI and the suite run on 10.x).
# Shared genetic-code resolution and normalized native yeast ORF contigs.
varcode>=10.20.2,<11
pandas>=3,<4
pysam>=0.15.2
edlib>=1.3.9.post1,<2

# Reads Isovar's packaged Sid test reads and makes them again, and acquires regions
# for research audits.
osteosarc>=0.15.5,<0.16

# Shared species-scoped ORF models and reference MS observations.
orfdata>=0.39.1,<1

# Figures and PDF reports are part of the standard CLI installation.
matplotlib>=3.6,<4
reportlab>=4,<6
pypdf>=5,<7
