oncoref/__init__.py,sha256=ZM9iw6sXd7mTgSbhMLL3I7Z2DpLMyOMHy5l9OaHILos,13716
oncoref/apd1.py,sha256=agSc3n1KxPrBPKppKQU82JDRq_2FkNZFk2gB481JNyE,2830
oncoref/cancer_genes.py,sha256=Kg5BXAL_RaLLRSB5yALHcDBvt6y1kO24SKoUS27XOMw,5721
oncoref/cancer_types.py,sha256=r2zaDkH_EGqOQtS_8qKACZb_dRap9NgRtP8zpr3Cmh8,33195
oncoref/catalog.py,sha256=JNLHpFjjL8UxUXEHG9UCkt342T3sDg1ZgIwXY2GjmjA,10735
oncoref/cli.py,sha256=x8nwHHaUpZDpqSFFwmyu6iyq8bcYuVs_hL6CYs9SMn0,26208
oncoref/coverage.py,sha256=AYyeJK2n0Y7kv22D_GuPV9aSeABIrCfBxZY8NP--7gI,26143
oncoref/cta.py,sha256=oH1HsLhmw5y8EOOY7yubx-23KROyGsneDvYT3DnmcCg,19508
oncoref/cta_curation_plots.py,sha256=Y175fJma00L-6Y8TbcpDPJQ_SLkfY-sTpvNer56TUW4,9136
oncoref/cta_regen.py,sha256=HP7gIHEvpgUWcY9Ps3BRSpL_kG0gpmMzLXLFSAEvQqE,22874
oncoref/cta_tissues.py,sha256=p0LYszh1MZdG5WbqpjWOdBn59QgEZyibrRacxt2Fccc,6337
oncoref/data_bundle.py,sha256=uqOZy96GQ34y5kCUefhaU57frCNKaZqEqJIbA6ABI00,13906
oncoref/data_manifest.py,sha256=7a72FBRHPNVSuIybe5c4t5vbtNvIDBKmnUTZgFDjU5k,13415
oncoref/expression.py,sha256=8yaUB5Fpk21GESsaRQO3Ns_KeHFt71GR4qdupfy-nT0,64437
oncoref/expression_builders.py,sha256=-ogwVO6Gwv26skbs5ESkJ0R6j4X0SPYAlmT4gRBrMPw,14321
oncoref/expression_engine.py,sha256=-zqNOSwhBu2H787pmrysJ3zUCN0jVhvP7owoUqQZK6k,7300
oncoref/expression_registry.py,sha256=wcFfQwe6QzO1JnZgZkjbVfbAsoMLVioTh_ejB8mNdxk,5664
oncoref/fusions.py,sha256=oaJFOLK3HVCFz0a2UVA0h4AhjCAorOw5UMhJ7LIR4Rk,7619
oncoref/gene_families.py,sha256=7UMfcxdT5WpJCHTxM8V0Vwj2Mu1QnzsG4uhZhj0k3zw,5467
oncoref/gene_ids.py,sha256=9TakTsh1TMf0v5_pk-A7aQG8aFva9n_yqZB_OFhvFH4,7679
oncoref/gene_qc.py,sha256=itACNEUNWUemc-c1IKen4a_GeTkx6xXCwDSfFvI8RFM,9814
oncoref/genome.py,sha256=3EGCYH4e-pigipLvvJVncfYwhYlcSLHc4ZZ8d5ll1Nw,11445
oncoref/hpa.py,sha256=gbjxtu8z0KvZ_lQzI4_tqDwDzX4WvZpYItMhV2MEdiY,4703
oncoref/ici.py,sha256=Oy9ust94lLdhD9XCukq6r13oU7aoiJObyY07t6oP9Y4,19839
oncoref/incidence.py,sha256=9OA8R-PUsujNqJCCsQLvRNXUPLuBeo8eV9oEa8A0LDM,7065
oncoref/load_dataset.py,sha256=yUjoeTfcFDBlc7hXVbvGrzpqd_lM7-FXtRN_JeXM-TM,8934
oncoref/normalization.py,sha256=skP1PSajquOfl8P3Z8ibqxTySulBt3O_eXOLdrkgJJ4,29476
oncoref/peptides.py,sha256=HbwqD0eHr4hg-9yi-O3p0NYT69VpOgF8iYDA0J6amWw,10332
oncoref/plots.py,sha256=d3LhkyqjwSOLpxVtblBdrBXZbwv6wp-jV8K7C-0UIpc,55839
oncoref/proteoforms.py,sha256=dmt3R53XBIATk7E5tQDhdnq0MWpPlOldNWdfL4mjA5k,16146
oncoref/reference_data.py,sha256=OTc64tILgF7KImfTp1-K0aJmOAtn4FGCMuYPQ5fz0cg,11263
oncoref/response_signatures.py,sha256=aQGvpcq8g49UScOlr9P-nWRI-5GwDMZygbbWrUET5dY,3691
oncoref/samples.py,sha256=s8bBhvPtk7ljVfulKdR6xDzSLdbMaOLMTLCg3zvDLSA,2913
oncoref/source_matrices.py,sha256=gsIiAq0dJou2ijT74xqGoLJLzxpPNRJAvpqs85jbAHQ,5145
oncoref/tmb.py,sha256=YnWoJ3o5JH5QAEYhFRDTXbiijAIQC4RPgQgyCI9oFRU,4534
oncoref/version.py,sha256=ptragwyMf_3R356qz7nEGPuYMHDZ_DHNZqH097IcJW8,1679
oncoref/data/cancer-apd1-response.csv,sha256=1urCFef66PPSUx-5jfULPW6_IfQqGdyN7wUMjYRE6dM,15431
oncoref/data/cancer-code-burden-map.csv,sha256=bsJj1LHtNTKAQtLeQ_IRJxQyXuYzeGYGWvzUGXelJbc,115
oncoref/data/cancer-cohort-aggregates.csv,sha256=LUTgQkgudhbceQboJfvsXkxckO4umr1L-6Cqhi-c-SQ,1106
oncoref/data/cancer-driver-genes.csv,sha256=2_t22QbiGNqy2U6Q3VH420HbzPbILaETEbqkGOpzj98,50213
oncoref/data/cancer-driver-variants.csv,sha256=1Wg4WyIfDij2GeM1i0LOx0SbbUNCN1Ft-HG3-OntRUk,26938
oncoref/data/cancer-expression-source-candidates.csv,sha256=AzaiZ4anfVcXw6FA2Kdqs1sMVZK6iYY4NBxr8Mc70-0,19940
oncoref/data/cancer-frameshift-burden.csv,sha256=JCBORXn3_cox-yXS3y8zdot6uCX4DO53zjRCwDrYlUQ,3345
oncoref/data/cancer-fusions.csv,sha256=h9QOePb0n8bjKEO7cmXJGGT5Capu0lOsjJVsVOQCAEI,26816
oncoref/data/cancer-ici-response-estimates.csv,sha256=Hs7U_o09b1QVEwk7tvmV6NrASwmhxywpxvYNBeGJtT4,215473
oncoref/data/cancer-ici-response.csv,sha256=Ueu47S0rAKsj_FCCbKyTNWPnbdgSqzugPepYBezVdIU,19314
oncoref/data/cancer-incidence-mortality.csv,sha256=_DDLIXNDZoi7DDQfROXhlWV7Drt48hvkJGaoMyk6D-Q,3421
oncoref/data/cancer-key-genes.csv,sha256=RhY6H-nbUUPi-reQlDv16fFMPCdWpAskEXmpY7yxz3s,138275
oncoref/data/cancer-lineage-group-overrides.csv,sha256=nGgAub8fZZcsklUsNKl99IzAD20m8XMOodrx_cAzqSc,140
oncoref/data/cancer-lineage-groups.csv,sha256=PWBWvg9kDoIN1fyR6WHGKdXpuXO0YIzUo2JwM4ZtQoo,626
oncoref/data/cancer-reference-expression-samples.csv.gz,sha256=Q5TaLv59GOv5K7f1NPCXePF2GSMAf7OfOXrSeQi24K0,253857
oncoref/data/cancer-response-signatures.csv,sha256=hgO0rHzxTwP2_DQKsZXHdP7wim5eGGc1RIQtcgTGDq0,2751
oncoref/data/cancer-subtype-groupings.csv,sha256=e9FVAc37yqt1Tw3dbmR1AtxILzZ9MF7DzGDZMILzoCI,750
oncoref/data/cancer-testis-antigens.csv,sha256=I32c5UWs_J4IQvvzVGdTJIJY_TMqgbtz0NYfCiDxcpQ,136674
oncoref/data/cancer-tmb.csv,sha256=2zsEF6EmH0uT3mIAQK8JpoCPYvcsAqgqswwzPH-PCcA,12751
oncoref/data/cancer-type-genes.csv,sha256=PcCvERtiePZZXJ3REvzjQ1u3zEmCjdnDsFSjerrVKvo,19861
oncoref/data/cancer-type-registry.csv,sha256=VNod1-TgHCkzbPCb_kZO7I0cFkTzEIzeY4ymsyF5ShA,35951
oncoref/data/cancer-viral-antigens.csv,sha256=DpefwtzkbxqyxwRwzSoUPJc8aZEI6a6VSYMEgQz7wco,1348
oncoref/data/canonical-gene-space.csv.gz,sha256=HrGeN-DcGiSlcJa779ZcDPaaFZmlYz_1Fo2rp2rxdv8,489932
oncoref/data/cdna-identical-gene-groups.csv,sha256=bs4IfFoafW50vXfrX_Vr6-ISjwGU6Jp74LKmqHUKAqw,16901
oncoref/data/censored-gene-reference-tpm.csv,sha256=H4bCG9TXwkCAMQqR76F6k4_peB24LMtU0aZaAzjyC5k,23424
oncoref/data/clean-tpm-censored-genes.csv,sha256=DaZrN6oL3E2idKgbGYbs5XmOoT2IP20vfL7H2FzSEGA,111241
oncoref/data/cohort-registry.csv,sha256=bK7-FCn3jvWYkHQDuJ-xAWVDNVuZQQyGUv_LKGFGXqU,9504
oncoref/data/cta-candidate-references.csv,sha256=XVn3_xbSeKl0p19Qzwc-bgv1ZPEBhkhiZDRxdUOqOkY,2264
oncoref/data/cta-ihc-unreliable.csv,sha256=V-wOwmTGju2bfTwiCQ6d8lKlP-1YUP55yvW8Fgeg7LI,708
oncoref/data/degenerate-subtype-pairs.csv,sha256=MNRZWhOIOYGT2Ny11WuTFlnCnax5-OOF8cGGWGEFO3s,4042
oncoref/data/disease-state-rules.csv,sha256=eyj47qZZ0-590Kw_dlu2bT1k3SlNephqGHORHhsZsXQ,1984
oncoref/data/ensembl-id-aliases.csv,sha256=-yEATXJAijuygzNKYvyd4u0zRe3ZF-sW7QfTWW01PfQ,361972
oncoref/data/expression_sources.yaml,sha256=oLmFbV5zqMxmyDP4T01y6t_TAZ0kJhKz5hunaaYqygk,35911
oncoref/data/extra-tx-mappings.csv,sha256=vhfaBfjySOc_4BM4TR4rvZa4Kmryfe89IJ8ft_RfGj4,7392
oncoref/data/family-burden-map.csv,sha256=wQCeLNYgawJSAq11qj12IJvTUuHoBgedPA_Tplc_hXo,247
oncoref/data/fusion-expression-effects.csv,sha256=qpXCIPAWiWy1_JcNwAGG8ZWmFL1GJ80XxiO6gIdvnvA,2664
oncoref/data/fusion-surrogate-expression.csv,sha256=9YMIBX4UgUEJjbcLw85oTiST7BKbIcOD2qN2JD-m3xk,6509
oncoref/data/hemoglobin-genes.csv,sha256=FczCT5XDaurU4hXOxeRtPTwjHZ_-mA0mblGQwLCsw4w,273
oncoref/data/histone-genes.csv,sha256=bbtQbnCBopG-xSIlt8sxj326WGdjxClDRut530LT-sY,4645
oncoref/data/housekeeping-genes.csv,sha256=jIWP3Xk5dURaPmXeGar00jG-Q7IYGFLFWOOJQdgZ9Ps,3294
oncoref/data/mitochondrial-genes.csv,sha256=l_DyxUK_y0pFuVbZDt7wr9s4S4t0TI12NP9NE7AytSU,1181
oncoref/data/narrative-gene-sets.csv,sha256=RR9zWmAHDkTEs6YeKDLyjFfsmENoqBd4Ebq7Nh19MtQ,325
oncoref/data/ncbi-symbol-synonyms.csv.gz,sha256=Ipa5du154eyH00FVj_fsbgJwyDEI6pYSey029cyAP40,380026
oncoref/data/nuclear-retained-lncrnas.csv,sha256=zsNEBi4jFU50YSpaPY6YVbOf4dRSraonKaoKsNxhEVE,114
oncoref/data/numt-pseudogenes.csv,sha256=EaDxf-mSkGyk3QA7aciKQGnEQGHZQXAwdRkrcQCSXXs,10267
oncoref/data/proteoform-collapse-overrides.csv,sha256=2U2b_XXA2DdQiA2or04bMuLm0N5kfd5fL2_hdY0oRw8,281
oncoref/data/proteoform-groups-genome.csv,sha256=s69DOELJE1PR1SgojSXkwv8IKMqIMmV5H54P-6tfm3w,22526
oncoref/data/proteoform-groups.csv,sha256=badsup-vwTqdcHm0oeBdMWv5ErOZ_zrOwmIzgVjMhf4,3019
oncoref/data/rare-cancer-fusion-rules.csv,sha256=x_SuR0KX0qBWQ7-yjVXUr8vvURj1wP99FaMFHpYE3SY,9826
oncoref/data/ribosomal-protein-genes.csv,sha256=_gGSCorJJ88Zuj0KT7IO4y7GEoSwpXgLKl_nXTmqMdk,2742
oncoref/data/ribosomal-protein-pseudogenes.csv,sha256=2xeXlt6l6eMfZR0U-ygoRdhb800LSJAT-cNSwQcrEc8,40542
oncoref/data/rrna-and-pseudogenes.csv,sha256=jWpKki1ooTKwx76NTSym-k5BsULNu-06VrmH9-UikHo,14368
oncoref/data/small-noncoding-rnas.csv,sha256=DOZ2SW4QjlACRRjUlueaBQvkiZuMxIUSPQb2-0eoJps,156824
oncoref/data/source-matrices.csv,sha256=nwH6thejKMvBVTuiy1w6S6GSYPtrE3lH3QL3Pgt5_c0,3862
oncoref/data/tissue-burden-map.csv,sha256=jEZYWzQ0V1P429Kj7IlPOcClm9EteRAh_HeWw9mP3po,2312
oncoref-1.8.4.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
oncoref-1.8.4.dist-info/METADATA,sha256=HNYPaydp7LfRh3GJswnW4Tv0gTuWDhKdTVzL7YyhjRc,8078
oncoref-1.8.4.dist-info/WHEEL,sha256=aeYiig01lYGDzBgS8HxWXOg3uV61G9ijOsup-k9o1sk,91
oncoref-1.8.4.dist-info/entry_points.txt,sha256=Vy_XXx4Vfrhe2Z1cxfzhqUcvny5aKf748enJ8Xf6jOM,45
oncoref-1.8.4.dist-info/top_level.txt,sha256=CTynKSTtPo2dP3a17p8m0CcLWADOPTCMVGsdAl_Cv-Q,8
oncoref-1.8.4.dist-info/RECORD,,
