# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Package setup
*.egg-info
/build
/dist

# Sphinx documentation
docs/build/*

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# MacOS
.DS_Store

# Environments
.env
.venv
env/
venv/
ENV/

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Ignore visual code settings
# /.vscode

# Ignore TODO list
TODO.md
CHANGELOG.md
/.trash
.DS_Store

# Ignore testing cache
.pytest_cache
.coverage
docs/coverage_report/*

# Ignore test jupyter notebooks
spatiomic/*.ipynb

# Keep folders indicated by .gitkeep
!/**/.gitkeep
!/**/.gitignore

# Don't include example data
example

# Ignore data directories
docs/source/tutorials/data/advanced_dkd/
docs/source/tutorials/data/mouse_cgn/

# local github actions testing
test/data/multi-channel.ome.tiff
test/data/test.ipynb
docs/source/tutorials/benchmark_small.py
docs/source/tutorials/benchmark.ipynb
