biopython==1.85
pandas==2.2.3
pandera==0.27.1
pydantic<2.12.0
pyfastx==2.2.0
intervaltree==3.1.0
click~=8.1.8
requests~=2.32
bcbio-gff==0.7.1
datamodel-code-generator==0.54.1

[dev]
pre-commit==4.2.0
ruff==0.8.4

[test]
pytest==8.3.5
pytest-md==0.2.0
pytest-workflow==2.1.0
