.dockerignore
.gitignore
.zenodo.json
CHANGELOG.md
Dockerfile
LICENSE
MANIFEST.in
README.md
RELEASING.md
pyproject.toml
requirements.txt
.github/scripts/generate_bioconda_pr.py
.github/scripts/update_bioconda.py
.github/scripts/zenodo_upload.py
.github/workflows/bioconda-pr.yml
.github/workflows/docker-publish.yml
.github/workflows/release.yml
remag/__init__.py
remag/__main__.py
remag/cli.py
remag/clustering.py
remag/core.py
remag/features.py
remag/miniprot_utils.py
remag/models.py
remag/output.py
remag/refinement.py
remag/utils.py
remag.egg-info/PKG-INFO
remag.egg-info/SOURCES.txt
remag.egg-info/dependency_links.txt
remag.egg-info/entry_points.txt
remag.egg-info/requires.txt
remag.egg-info/top_level.txt
remag/db/refseq_db.faa.gz
remag/db/rep_eukaryota_odb12.faa.gz
remag/xgbclass/__init__.py
remag/xgbclass/xgb_class.py
remag/xgbclass/xgb_utils.py
remag/xgbclass/models/s1000
remag/xgbclass/models/s10000
remag/xgbclass/models/s500
remag/xgbclass/models/s5000
remag/xgbclass/models/s50000
remag/xgbclass/models/xgb1000.json
remag/xgbclass/models/xgb10000.json
remag/xgbclass/models/xgb500.json
remag/xgbclass/models/xgb5000.json
remag/xgbclass/models/xgb50000.json