multi_med_image_mlΒΆ
- multi_med_image_ml package
- Submodules
- multi_med_image_ml.DataBaseWrapper module
DataBaseWrapper
DataBaseWrapper.database
DataBaseWrapper.filename
DataBaseWrapper.labels
DataBaseWrapper.confounds
DataBaseWrapper.val_ranges
DataBaseWrapper.X_dim
DataBaseWrapper.key_to_filename
DataBaseWrapper.jdict
DataBaseWrapper.columns
DataBaseWrapper.add_json()
DataBaseWrapper.build_metadata()
DataBaseWrapper.get_ID()
DataBaseWrapper.get_birth_date()
DataBaseWrapper.get_confound_encode()
DataBaseWrapper.get_exam_date()
DataBaseWrapper.get_file_list()
DataBaseWrapper.get_label_encode()
DataBaseWrapper.has_im()
DataBaseWrapper.in_val_ranges()
DataBaseWrapper.loc_val()
DataBaseWrapper.out_dataframe()
DataBaseWrapper.parse_date()
DataBaseWrapper.stack_list_by_label()
- multi_med_image_ml.MedImageLoader module
MedImageLoader
MedImageLoader.database
MedImageLoader.X_dim
MedImageLoader.Y_dim
MedImageLoader.C_dim
MedImageLoader.batch_size
MedImageLoader.augment
MedImageLoader.dtype
MedImageLoader.label
MedImageLoader.confounds
MedImageLoader.pandas_cache
MedImageLoader.cache
MedImageLoader.key_to_filename
MedImageLoader.batch_by_pid
MedImageLoader.file_record_name
MedImageLoader.channels_first
MedImageLoader.static_inputs
MedImageLoader.val_ranges
MedImageLoader.match_confounds
MedImageLoader.all_records
MedImageLoader.n_dyn_inputs
MedImageLoader.precedence
MedImageLoader.build_pandas_database()
MedImageLoader.get_abs_index()
MedImageLoader.get_file_list()
MedImageLoader.get_index()
MedImageLoader.index_plus()
MedImageLoader.index_zero()
MedImageLoader.load_image_stack()
MedImageLoader.name()
MedImageLoader.read_record()
MedImageLoader.record()
MedImageLoader.rotate_labels()
MedImageLoader.switch_stack()
MedImageLoader.tl()
key_to_filename_default()
- multi_med_image_ml.MultiInputTester module
MultiInputTester
MultiInputTester.database
MultiInputTester.model
MultiInputTester.out_record_folder
MultiInputTester.checkpoint_dir
MultiInputTester.name
MultiInputTester.test_name
MultiInputTester.database_key
MultiInputTester.min_pids
MultiInputTester.top_not_mean
MultiInputTester.include_inds
MultiInputTester.same_patients
MultiInputTester.x_axis_opts
MultiInputTester.acc()
MultiInputTester.attn_map_vis()
MultiInputTester.grad_cam()
MultiInputTester.loop()
MultiInputTester.out_grad_cam_groups()
MultiInputTester.out_state_dict()
MultiInputTester.pca_analysis()
MultiInputTester.plot()
MultiInputTester.read_json()
MultiInputTester.record()
MultiInputTester.save_encodings()
NotEnoughPatients
- multi_med_image_ml.MultiInputTrainer module
LossTracker
LossTracker.add_target()
LossTracker.get_last_xs()
LossTracker.get_last_y_class_adv_loss()
LossTracker.get_last_y_class_loss()
LossTracker.get_last_y_kl_loss()
LossTracker.get_last_y_reg_loss()
LossTracker.load()
LossTracker.plot()
LossTracker.save()
LossTracker.smooth()
LossTracker.title()
LossTracker.update()
MultiInputTrainer
MultiInputTrainer.model
MultiInputTrainer.lr
MultiInputTrainer.loss_function
MultiInputTrainer.name
MultiInputTrainer.optimizer
MultiInputTrainer.optimizer_reg
MultiInputTrainer.out_record_folder
MultiInputTrainer.checkpoint_dir
MultiInputTrainer.save_latest_freq
MultiInputTrainer.batch_size
MultiInputTrainer.verbose
MultiInputTrainer.update_classifier
MultiInputTrainer.index
MultiInputTrainer.get_time_str()
MultiInputTrainer.log_time()
MultiInputTrainer.loop()
MultiInputTrainer.reset_time()
MultiInputTrainer.test()
- multi_med_image_ml.Records module
AllRecords
BatchRecord
BatchRecord.image_records
BatchRecord.dtype
BatchRecord.gpu_ids
BatchRecord.channels_first
BatchRecord.batch_size
BatchRecord.get_C()
BatchRecord.get_C_dud()
BatchRecord.get_X()
BatchRecord.get_X_files()
BatchRecord.get_Y()
BatchRecord.get_birth_dates()
BatchRecord.get_exam_dates()
BatchRecord.get_static_inputs()
BatchRecord.get_text_records()
BatchRecord.name()
BatchRecord.shift_order()
BatchRecord.sort_order()
FileLookup
ImageRecord
ImageRecord.filename
ImageRecord.database
ImageRecord.dtype
ImageRecord.extra_info_list
ImageRecord.X_dim
ImageRecord.Y_dim
ImageRecord.C_dim
ImageRecord.image
ImageRecord.Y
ImageRecord.C
ImageRecord.y_on_c
ImageRecord.times_called
ImageRecord.static_inputs
ImageRecord.static_input_res
ImageRecord.cache
ImageRecord.npy_file
ImageRecord.npy_file
ImageRecord.exam_date
ImageRecord.bdate
ImageRecord.json_file
ImageRecord.loaded
ImageRecord.clear_image()
ImageRecord.get_C()
ImageRecord.get_C_dud()
ImageRecord.get_X()
ImageRecord.get_X_files()
ImageRecord.get_Y()
ImageRecord.get_image_type()
ImageRecord.get_mem()
ImageRecord.read_image()
PatientRecord
Record
TextRecord()
- multi_med_image_ml.models module
- multi_med_image_ml.utils module
YC_conv()
bucketize()
check_key_to_filename()
class_balance()
combine_covar()
compile_dicom()
compile_dicom_folder()
compile_dicom_py()
date_sorter()
determine_random_partition()
determine_random_partition2()
diagnose_network()
discretize_value()
download_file_from_google_drive()
download_weights()
encode_static_inputs()
equal_terms()
get_balanced_filename_list()
get_class_selection()
get_confirm_token()
get_data_from_filenames()
get_dim_str()
get_file_list()
get_file_list_from_list()
get_file_list_from_str()
get_first_n_primes()
get_lr()
get_multilabel_acc()
get_none_array()
get_prime_form()
hidden_batch_predictions()
integrate_arrs()
integrate_arrs_none()
is_dicom()
is_float()
is_image_file()
is_list_str()
is_nan()
key_to_filename_default()
label_to_community()
list_to_str()
mod_meas()
multi_mannwhitneyu()
nifti_to_np()
not_temp()
output_test()
parsedate()
prime()
print_numpy()
recompute_selection_ratios()
resize_np()
save_image()
save_response_content()
separate_set()
str_to_list()
tensor2im()
test_all()
text_to_bin()
validate_database()
- Module contents