.readthedocs.yaml
CHANGELOG.md
CITATION.cff
LICENSE
MANIFEST.in
README.md
THIRD_PARTY_DATA.md
pyproject.toml
.github/workflows/publish.yml
.github/workflows/tests.yml
docs/api.rst
docs/conf.py
docs/index.md
docs/inputs.md
docs/outputs.md
docs/quickstart.md
docs/release.md
docs/reporting-policy.md
docs/reproducibility.md
docs/statistics.md
examples/build_gse234933_subset.py
examples/gse234933_quickstart.ipynb
scripts/check_docs.py
scripts/prepare_bioconda.py
scripts/run_tutorial.py
src/pase/__init__.py
src/pase/_reporting.py
src/pase/_statistics.py
src/pase/association.py
src/pase/datasets.py
src/pase/result.py
src/pase/data/DATA_NOTICE.md
src/pase/data/gse234933_demo.npz
src/pase/data/gse234933_demo_manifest.json
src/pase/data/gse234933_demo_obs.tsv
src/pase_framework.egg-info/PKG-INFO
src/pase_framework.egg-info/SOURCES.txt
src/pase_framework.egg-info/dependency_links.txt
src/pase_framework.egg-info/requires.txt
src/pase_framework.egg-info/top_level.txt
tests/test_association.py
tests/test_datasets.py
tests/test_reporting.py