.flake8
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README.md
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prep_for_commit.sh
requirements.txt
setup.py
.github/workflows/python-package.yml
docs/Makefile
docs/conf.py
docs/grapp.rst
docs/index.rst
docs/requirements.txt
examples/.gitkeep
grapp/__init__.py
grapp/version.py
grapp.egg-info/PKG-INFO
grapp.egg-info/SOURCES.txt
grapp.egg-info/dependency_links.txt
grapp.egg-info/entry_points.txt
grapp.egg-info/requires.txt
grapp.egg-info/top_level.txt
grapp/../requirements.txt
grapp/assoc/__init__.py
grapp/cli/__init__.py
grapp/cli/assoc_cli.py
grapp/cli/export_cli.py
grapp/cli/filter_cli.py
grapp/cli/main.py
grapp/cli/pca_cli.py
grapp/cli/pheno_cli.py
grapp/cli/show_cli.py
grapp/cli/util.py
grapp/linalg/__init__.py
grapp/linalg/ops_scipy.py
grapp/linalg/proPCA.py
grapp/nn/__init__.py
grapp/util/__init__.py
grapp/util/filter.py
grapp/util/igd.py
grapp/util/simple.py
test/.gitkeep
test/requirements.txt
test/testing_utils.py
test/assoc/test_gwas.py
test/assoc/input/covar.baseline.txt
test/assoc/input/gwas.baseline.txt
test/assoc/input/phenotypes.txt
test/input/test-200-samples.miss.igd
test/input/test-200-samples.vcf.gz
test/linalg/test_eigs.py
test/linalg/test_ops.py
test/nn/test_exact.py
test/util/test_filt.py
test/util/test_igd.py