Metadata-Version: 2.4
Name: Demultiplex
Version: 1.2.3
Summary: Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes.
Project-URL: homepage, https://github.com/jfjlaros/demultiplex
Author-email: "Jeroen F.J. Laros" <jlaros@fixedpoint.nl>
License-Expression: MIT
License-File: LICENSE.md
Keywords: FASTA,FASTQ,barcode,bioinformatics,demultiplex
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering
Requires-Dist: biopython
Requires-Dist: dict-trie
Requires-Dist: fastools
Requires-Dist: jit-open
Requires-Dist: tssv
Description-Content-Type: text/x-rst

Demultiplex: FASTA/FASTQ demultiplexer
======================================

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----

Versatile NGS demultiplexer with the following features:

- Support for FASTA and FASTQ files.
- Support for gzip and bzip2 compressed files.
- Support for multiple reads per fragment, e.g., paired-end.
- Handles barcodes in the header and in the reads.
- Handles barcodes at *unknown* locations in reads (e.g., PacBio or Nanopore
  barcodes).
- Support for selection of part of a barcode.
- Allows for mismatches, insertions and deletions.
- Barcode guessing by frequency or fixed amount.
- Handles large numbers (over one million) of barcodes.

Please see ReadTheDocs_ for the latest documentation.


.. _ReadTheDocs: https://demultiplex.readthedocs.io/en/latest/index.html
